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KY318515.1__APU00338.1__fHeYen301_5__00005
Bact-VirKY318515.1__APU00338.1__fHeYen301_5__00005
Identity
- Accession:
- KY318515 ↗
- Kingdom:
- phage
Quality
76.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autonotataviridae›
Pokrovskaiavirus›
Yersinia_phage_fHe-Yen3-01
TaxID: 1932893
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-90
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nnwA02 | 1.10.287.4070 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 49.0 | 4.42e-01 | 100.0% | 63.0% |
| 1bqbA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.60 | 46.0 | 3.98e-01 | 83.0% | 88.2% |
| 3osnA03 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.60 | 38.0 | 4.05e-01 | 76.1% | 74.0% |
| 4q45A03 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.59 | 37.0 | 4.26e-01 | 75.0% | 100.0% |
| 2qgnA02 | 1.10.287.890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain | 0.56 | 33.0 | 3.45e-01 | 94.3% | 63.4% |
| 4o1gA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.54 | 44.0 | 3.04e-01 | 92.0% | 39.6% |
| 2w4sA00 | 1.10.10.1440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PHAX RNA-binding domain | 0.53 | 41.0 | 4.17e-01 | 84.1% | 97.7% |
| 1aoaA01 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.53 | 41.0 | 3.77e-01 | 84.1% | 84.7% |
| 2c42A03 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.52 | 40.0 | 3.13e-01 | 85.2% | 81.1% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.52 | 36.0 | 3.74e-01 | 72.7% | 94.9% |
| 4yibA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.51 | 42.0 | 3.61e-01 | 96.6% | 68.4% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3420661 | 592.7.1.0 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain | 0.62 | 40.0 | 4.10e-01 | 89.8% | 68.2% |
| 3955706 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.61 | 49.0 | 3.93e-01 | 89.8% | 63.2% |
| 4437800 | 129.1.1.11 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › ApbA_C | 0.57 | 42.0 | 3.91e-01 | 78.4% | 93.0% |
| 3961764 | 102.1.2.3 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Adenine_glyco | 0.53 | 43.0 | 3.98e-01 | 94.3% | 71.2% |
| 5009815 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.50 | 39.0 | 3.46e-01 | 86.4% | 63.7% |