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KY363465.1__AQT25231.1__PR1_123__00125

Bact-Vir

KY363465.1__AQT25231.1__PR1_123__00125

Identity

Accession:
KY363465 ↗
Kingdom:
phage

Quality

83.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Priunavirus› Providencia_phage_vB_PreS_PR1

TaxID: 1931407

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 191-267
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oocB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.55 44.0 4.07e-01 92.2% 90.5%
3nz4B03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.55 41.0 3.79e-01 81.8% 77.9%
7w5lA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.54 44.0 3.18e-01 93.5% 94.1%
3ju8A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.52 42.0 2.96e-01 93.5% 76.5%
3rosA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.50 42.0 3.03e-01 98.7% 87.3%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.50 37.0 3.48e-01 80.5% 100.0%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
54465 601.3.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.58 45.0 4.11e-01 85.7% 90.4%
4497602 601.3.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt 0.55 44.0 4.00e-01 93.5% 99.1%
3273841 7015.1.1.1 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC 0.53 39.0 3.15e-01 77.9% 80.0%
2808872 611.3.1.1 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.53 34.0 3.30e-01 96.1% 56.7%
D2 medium residues 1-64
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gaaB00 3.40.50.10900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit 0.71 55.0 3.68e-01 84.4% 45.5%
3hyuA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.65 49.0 3.78e-01 79.7% 43.3%
1ni5A02 1.20.59.20 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › 0.64 46.0 4.21e-01 78.1% 65.1%
4jd9G00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.60 45.0 3.66e-01 87.5% 43.3%
1wudA00 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.59 43.0 4.07e-01 78.1% 94.8%
4e3wA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.58 41.0 2.65e-01 76.6% 97.6%
6x6uA02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.56 39.0 2.71e-01 73.4% 51.9%
5q22A02 3.40.50.12650 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 41.0 3.16e-01 82.8% 83.8%
1gakA00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.53 41.0 3.40e-01 95.3% 42.3%
1omsA00 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.53 42.0 3.57e-01 93.8% 50.9%
3fayA00 1.10.506.10 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 0.53 44.0 2.80e-01 100.0% 39.3%
3juwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 37.0 2.84e-01 78.1% 29.3%
3pvlA03 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.51 43.0 3.51e-01 92.2% 71.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4994660 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 60.0 5.02e-01 93.8% 52.7%
3503756 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 56.0 5.51e-01 90.6% 100.0%
3406058 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.68 49.0 3.12e-01 81.2% 16.3%
3029523 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.63 47.0 3.08e-01 78.1% 70.8%
3518379 3502.1.1.1 ↗ alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG 0.63 42.0 4.52e-01 70.3% 85.5%
3217316 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.63 50.0 4.26e-01 87.5% 90.5%
3174920 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.62 48.0 4.43e-01 95.3% 64.7%
3654479 101.1.2.361 ↗ alpha arrays › HTH › HTH › winged helix domain › Myb_DNA-binding 0.60 45.0 4.22e-01 98.4% 63.5%
3940379 3542.1.1.0 ↗ alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases 0.57 47.0 3.11e-01 93.8% 20.7%
3248755 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.57 42.0 3.94e-01 100.0% 62.4%
3198602 148.1.3.212 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_13 0.57 45.0 3.82e-01 90.6% 58.3%
3338678 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 47.0 2.86e-01 95.3% 87.5%
4332463 2003.1.2.25 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 46.0 3.26e-01 96.9% 47.1%
4010800 3355.1.1.16 ↗ alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › DcuC 0.55 45.0 2.84e-01 100.0% 47.3%
5001308 871.1.1.1 ↗ a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 0.55 41.0 2.85e-01 81.2% 56.7%
4872161 1131.1.1.1 ↗ extended segments › Mitochondrial complex I, B14.5b subunit › Mitochondrial complex I, B14.5b subunit › Mitochondrial complex I, B14.5b subunit › NDUF_C2 0.55 45.0 3.75e-01 93.8% 50.8%
3120 163.1.1.1 ↗ alpha arrays › Fertilization protein › Fertilization protein › Fertilization protein › Egg_lysin 0.53 41.0 3.40e-01 95.3% 42.3%
3919989 192.5.1.19 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › OCIA 0.52 41.0 3.91e-01 90.6% 78.8%
D3 medium residues 65-184
PDB
Domain cluster: rep: MZ079855.1__QXN67551.1__X__00067__D1-19_330-380_410-425
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00476.27 best DNA_pol_A 51.0 1.60e-13 95.0% 25.2%