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KY379511.2__AQN32312.1__X__00030

Bact-Vir

KY379511.2__AQN32312.1__X__00030

Identity

Accession:
KY379511 ↗
Kingdom:
phage

Quality

88.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-181
PDB
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5wm1A02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.55 30.0 3.78e-01 72.9% 88.1%
1gh8A00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.54 28.0 3.83e-01 79.6% 100.0%
2v50D07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.54 29.0 3.78e-01 71.8% 95.8%
4mt1A07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.52 29.0 3.71e-01 82.3% 94.1%
7rd0A01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.52 30.0 3.20e-01 78.5% 62.6%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959043 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.66 61.0 5.02e-01 100.0% 84.0%
5000686 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.66 53.0 4.51e-01 83.4% 89.8%
5066297 862.1.1.5 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.65 60.0 5.19e-01 100.0% 96.4%
5000831 862.1.1.5 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.62 57.0 4.94e-01 100.0% 99.6%
3989046 862.1.1.8 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP-TOTE 0.58 52.0 4.85e-01 97.2% 100.0%
3269598 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.56 26.0 3.72e-01 77.9% 97.5%
4141589 304.48.1.10 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS 0.52 30.0 3.47e-01 72.4% 76.9%
3701221 304.43.1.0 a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 0.51 31.0 3.81e-01 77.9% 100.0%
1933420 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.51 28.0 3.67e-01 79.6% 96.1%
3723378 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.51 25.0 3.48e-01 72.4% 97.6%
5027967 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.51 26.0 3.51e-01 79.0% 100.0%
D2 high residues 195-288
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08707.17 best PriCT_2 50.8 2.40e-13 84.0% 94.8%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t9kA01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.64 44.0 3.93e-01 72.3% 62.1%
2pbxA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 44.0 3.53e-01 77.7% 54.3%
2lt3A01 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.59 41.0 4.06e-01 71.3% 78.0%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.58 46.0 4.26e-01 88.3% 83.3%
1nfvA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 46.0 3.87e-01 87.2% 62.7%
4d0nB01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.58 46.0 3.41e-01 86.2% 66.5%
6vvoE02 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.57 42.0 4.22e-01 78.7% 83.8%
1n5uA02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.57 39.0 4.03e-01 70.2% 75.6%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.57 40.0 3.89e-01 74.5% 89.8%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.56 41.0 3.60e-01 79.8% 97.4%
1sm7A00 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.55 38.0 3.65e-01 72.3% 88.1%
1jr8A00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.55 37.0 3.63e-01 70.2% 96.2%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.53 37.0 3.93e-01 100.0% 83.3%
1lkoA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 42.0 3.68e-01 87.2% 72.4%
4l7aA00 3.40.390.70 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › 0.52 39.0 2.85e-01 77.7% 65.1%
6m9sB01 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.52 41.0 3.19e-01 86.2% 54.8%
1sxjE03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.52 40.0 4.01e-01 84.0% 89.7%
2fzfA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 40.0 3.46e-01 86.2% 68.0%
1he1A00 1.20.120.260 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain 0.50 42.0 3.81e-01 94.7% 81.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4973692 182.1.3.0 alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.69 59.0 5.86e-01 96.8% 97.0%
3690869 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 49.0 4.95e-01 75.5% 90.5%
5001655 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.65 48.0 3.80e-01 78.7% 91.5%
5055701 1076.1.1.1 alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like 0.65 48.0 3.82e-01 78.7% 87.9%
3523450 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.65 51.0 3.87e-01 85.1% 83.9%
4461553 3651.1.1.1 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.63 45.0 4.03e-01 75.5% 63.0%
3931385 170.1.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.63 43.0 4.29e-01 70.2% 77.9%
4272497 3651.1.1.0 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain 0.62 45.0 4.06e-01 76.6% 64.6%
4046955 531.2.1.1 alpha arrays › Domains of FliG › Middle domain of FliG › Middle domain of FliG › FliG_M 0.61 46.0 4.65e-01 90.4% 82.1%
3619983 109.27.1.1 alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BACK 0.58 41.0 3.92e-01 73.4% 66.4%
3176095 101.1.22.0 alpha arrays › HTH › HTH › double HTH 0.56 40.0 3.81e-01 73.4% 87.3%
3793269 109.27.1.1 alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BACK 0.56 40.0 3.50e-01 75.5% 70.7%
3692083 608.1.1.0 alpha arrays › AhpD-like › AhpD-like › AhpD-like 0.55 48.0 3.58e-01 100.0% 77.6%
5072027 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.54 40.0 3.24e-01 80.9% 91.2%
3611610 1075.5.1.5 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Rft-1 0.54 42.0 3.15e-01 86.2% 78.4%
4928675 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 31.0 3.38e-01 98.9% 72.0%
D3 high residues 293-411
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.73 24.0 4.04e-01 89.9% 85.4%
7ri3A02 1.10.490.40 Mainly Alpha › Orthogonal Bundle › Globin-like › Diphtheria toxin, translocation domain 0.65 52.0 4.68e-01 100.0% 62.3%
5xukA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.59 33.0 3.41e-01 96.6% 54.8%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.59 35.0 4.32e-01 95.8% 94.6%
1te2A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 34.0 4.14e-01 97.5% 95.8%
2w31A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 43.0 4.04e-01 100.0% 63.8%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.56 28.0 3.27e-01 95.8% 65.5%
4zvaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 45.0 4.24e-01 100.0% 70.5%
2d7vB00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.55 39.0 3.64e-01 98.3% 56.9%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.55 31.0 3.85e-01 98.3% 91.7%
5tkwA02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.54 29.0 3.71e-01 72.3% 92.4%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.53 26.0 3.16e-01 97.5% 71.2%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.53 29.0 3.53e-01 90.8% 89.6%
4phtY02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.52 26.0 3.48e-01 72.3% 91.9%
5ayvA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 33.0 3.32e-01 88.2% 60.8%
3vayA02 1.20.120.1600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.52 36.0 4.13e-01 95.8% 100.0%
5pg1A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.51 41.0 4.22e-01 95.0% 89.6%
2kobA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.51 35.0 3.88e-01 98.3% 92.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3839435 330.9.1.0 a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p 0.60 29.0 3.55e-01 86.6% 70.7%
5055783 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.59 31.0 3.44e-01 99.2% 63.3%
25624 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.59 26.0 3.83e-01 90.8% 96.2%
1176726 4325.1.1.2 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › P53_C 0.57 26.0 3.21e-01 96.6% 66.2%
3906775 3921.1.1.0 alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D 0.57 45.0 4.29e-01 99.2% 71.7%
3487960 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 36.0 2.77e-01 91.6% 29.4%
4189267 3604.1.1.0 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.54 28.0 3.54e-01 84.9% 91.7%
3273217 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.54 28.0 3.02e-01 99.2% 55.8%
3645559 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.53 29.0 3.25e-01 90.8% 67.8%
3400515 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.53 46.0 3.08e-01 98.3% 63.5%
5057417 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 30.0 3.46e-01 99.2% 79.5%
4324539 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.51 38.0 3.12e-01 79.8% 72.1%
3504717 106.1.1.8 alpha arrays › Globin-like › Globin-like › Globin-like › HisK-N-like 0.51 41.0 3.89e-01 98.3% 71.7%
1883343 101.1.2.211 alpha arrays › HTH › HTH › winged helix domain › PKMT_2nd 0.50 35.0 3.53e-01 100.0% 72.4%
D4 high residues 674-767
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o3sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 5.34e-01 93.6% 100.0%
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 5.26e-01 97.9% 91.6%
1l9lA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.65 44.0 4.79e-01 97.9% 87.8%
1u5tB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 53.0 5.53e-01 96.8% 98.8%
1z21A00 1.10.10.1000 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Type III secretion system virulence factor YopR, core domain 0.55 40.0 4.07e-01 97.9% 76.0%
2keyA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.54 39.0 3.75e-01 95.7% 64.3%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.54 37.0 4.14e-01 81.9% 100.0%
1vi0A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 43.0 3.79e-01 95.7% 74.5%
1repC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 4.33e-01 96.8% 97.8%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1109319 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.69 49.0 5.08e-01 93.6% 80.2%
3232528 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 47.0 5.28e-01 95.7% 98.6%
4025053 101.1.2.166 alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.64 55.0 5.49e-01 98.9% 93.7%
3738271 101.1.2.166 alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.62 55.0 5.23e-01 100.0% 86.4%
3797719 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 49.0 4.58e-01 100.0% 69.6%
3737595 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.61 54.0 3.98e-01 100.0% 44.7%
3260653 101.1.2.166 alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.60 52.0 5.22e-01 97.9% 97.9%
3604108 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 51.0 4.73e-01 100.0% 100.0%
3432076 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.57 47.0 4.54e-01 95.7% 78.2%
3174361 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.57 50.0 3.79e-01 100.0% 44.1%
3724203 244.1.1.6 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase 0.57 49.0 3.11e-01 95.7% 64.3%
3406884 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 50.0 3.71e-01 100.0% 37.6%
5053793 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 4.41e-01 98.9% 76.5%
4943538 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.56 46.0 3.12e-01 94.7% 33.6%
2417935 101.1.2.192 alpha arrays › HTH › HTH › winged helix domain › B_lactamase-like_C 0.56 39.0 4.38e-01 92.6% 98.6%
3792911 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.55 44.0 4.16e-01 100.0% 73.0%
4034068 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.53 39.0 3.86e-01 96.8% 74.0%
3924031 3636.1.1.0 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.52 36.0 2.87e-01 71.3% 67.0%
4961908 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.51 38.0 4.02e-01 89.4% 93.8%