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KY389063.1__AQN32185.1__X__00012

Bact-Vir

KY389063.1__AQN32185.1__X__00012

Identity

Accession:
KY389063 ↗
Kingdom:
phage

Quality

88.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-57
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.92 75.0 5.98e-01 87.7% 48.0%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.82 66.0 6.84e-01 87.7% 98.1%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.77 56.0 5.39e-01 86.0% 67.2%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.76 64.0 5.52e-01 96.5% 62.6%
6gy8A01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.75 57.0 3.46e-01 80.7% 80.4%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.74 62.0 6.08e-01 96.5% 88.5%
1a36A04 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.74 55.0 3.95e-01 91.2% 26.9%
3nkuA00 1.10.357.170 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.73 64.0 4.53e-01 100.0% 37.5%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 51.0 4.79e-01 73.7% 87.0%
1qdbA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.73 50.0 3.67e-01 80.7% 28.7%
3ujpB01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.71 54.0 4.02e-01 86.0% 32.4%
1x0tA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.70 54.0 5.30e-01 82.5% 82.0%
1lwbA00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.70 52.0 4.20e-01 93.0% 39.3%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.70 53.0 4.79e-01 80.7% 80.5%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.69 49.0 5.23e-01 91.2% 85.7%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 48.0 4.49e-01 75.4% 61.6%
3h6pC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 57.0 5.74e-01 100.0% 96.4%
3k1hA00 3.30.1120.180 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 0.67 52.0 4.24e-01 89.5% 43.5%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.67 48.0 5.14e-01 82.5% 89.6%
1eteA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.66 51.0 3.90e-01 84.2% 56.0%
2mpnA00 6.10.140.1340 Special › Helix non-globular › Helix Hairpins › 0.66 54.0 5.19e-01 94.7% 83.8%
2ynqB00 1.25.40.680 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain 0.66 51.0 3.71e-01 87.7% 31.1%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.66 56.0 5.07e-01 100.0% 70.5%
4ex8A00 3.40.1790.10 Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain 0.65 51.0 3.26e-01 91.2% 16.6%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.65 56.0 4.21e-01 100.0% 56.5%
1hzfA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.65 46.0 2.92e-01 75.4% 14.6%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.64 53.0 4.83e-01 89.5% 84.0%
3n5lA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 48.0 4.89e-01 93.0% 82.5%
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.64 53.0 4.34e-01 94.7% 50.0%
5b1oA00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.63 49.0 4.73e-01 94.7% 75.4%
2rbdA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.63 49.0 3.76e-01 89.5% 70.0%
2yw6B00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.62 54.0 4.00e-01 100.0% 74.0%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 53.0 4.87e-01 93.0% 87.3%
1vmgA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.61 49.0 4.28e-01 93.0% 58.5%
4akgA04 1.20.58.1120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 0.61 50.0 3.68e-01 91.2% 44.9%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.61 53.0 5.26e-01 93.0% 91.4%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 52.0 4.12e-01 96.5% 46.9%
3fseB02 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 49.0 3.78e-01 94.7% 75.0%
3syvA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.61 53.0 3.49e-01 100.0% 72.2%
1kfdA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.60 50.0 4.65e-01 93.0% 73.2%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.60 49.0 2.96e-01 94.7% 12.9%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 48.0 4.36e-01 89.5% 71.4%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 52.0 5.07e-01 100.0% 96.8%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.58 52.0 4.27e-01 100.0% 64.1%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 48.0 4.46e-01 100.0% 73.7%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.57 41.0 3.70e-01 77.2% 54.4%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.56 51.0 3.91e-01 100.0% 79.0%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.56 46.0 4.41e-01 89.5% 81.5%
2p4vA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.54 49.0 4.46e-01 100.0% 76.3%
2lf0A01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.53 40.0 3.98e-01 87.7% 81.7%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3174635 4207.1.1.102 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › PF29925 0.87 78.0 6.67e-01 100.0% 67.8%
1877692 6026.1.1.1 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 0.86 67.0 7.21e-01 86.0% 100.0%
4663888 5069.1.3.126 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › PLDc_N 0.85 72.0 6.40e-01 94.7% 66.3%
3930750 142.1.1.36 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › C_tripleX 0.83 67.0 6.13e-01 89.5% 66.7%
4235299 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.83 70.0 4.85e-01 100.0% 28.8%
3598977 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.82 72.0 6.32e-01 100.0% 71.8%
3505989 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.82 75.0 6.00e-01 100.0% 54.3%
4031490 632.2.1.5 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1542 0.81 68.0 6.21e-01 100.0% 70.7%
3165232 1078.1.1.0 extended segments › Bd-type quinol oxidase transmembrane helix subunit › Bd-type quinol oxidase transmembrane helix subunit › Bd-type quinol oxidase transmembrane helix subunit 0.80 59.0 6.42e-01 100.0% 100.0%
3640538 4120.1.1.0 few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.80 60.0 5.67e-01 89.5% 67.1%
3570117 375.6.1.2 few secondary structure elements › Rubredoxin-like › FlhC-like › FlhC-like › PF31275 0.80 67.0 6.61e-01 100.0% 88.3%
4279766 3757.1.1.0 extended segments › AF1503 pre-HAMP domain › AF1503 pre-HAMP domain › AF1503 pre-HAMP domain 0.78 60.0 5.98e-01 91.2% 80.0%
4986629 5065.1.1.3 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.77 64.0 4.08e-01 98.2% 19.3%
3643621 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.77 70.0 6.20e-01 100.0% 71.2%
5056100 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.77 54.0 4.91e-01 73.7% 65.3%
4940728 614.1.1.0 alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain 0.76 57.0 6.01e-01 87.7% 94.0%
3617842 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.75 68.0 6.07e-01 100.0% 76.2%
3575178 616.1.1.30 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Neur_chan_memb 0.75 49.0 4.42e-01 78.9% 50.7%
3843294 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.75 66.0 4.61e-01 100.0% 31.4%
1032114 150.5.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.74 62.0 6.08e-01 96.5% 88.5%
4026047 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.73 60.0 5.31e-01 100.0% 62.4%
1685299 6110.1.1.0 alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain 0.72 54.0 3.62e-01 84.2% 22.2%
3303117 605.4.1.0 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.71 62.0 5.50e-01 100.0% 71.8%
3245804 223.2.1.43 a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_M 0.71 56.0 4.09e-01 93.0% 31.4%
3183519 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.71 57.0 5.80e-01 89.5% 90.9%
4595635 148.1.3.26 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_9 0.70 55.0 3.95e-01 86.0% 60.0%
4952005 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.69 52.0 4.67e-01 82.5% 60.0%
3595968 605.2.1.0 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 0.68 52.0 4.65e-01 82.5% 71.2%
3251476 3470.1.1.0 extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain 0.68 57.0 5.35e-01 100.0% 80.8%
3927560 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.68 51.0 5.02e-01 80.7% 80.0%
3296414 192.29.1.168 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF641 0.66 53.0 4.94e-01 86.0% 74.3%
3180974 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 54.0 5.51e-01 89.5% 96.4%
4826095 5067.1.1.5 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Sterol-sensing 0.66 57.0 4.94e-01 100.0% 62.4%
4884522 304.28.1.17 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sterol-sensing 0.66 57.0 4.20e-01 100.0% 36.9%
4043979 3812.1.1.4 alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › GrpE 0.64 45.0 4.49e-01 75.4% 70.0%
5052222 3812.1.1.0 alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE 0.64 53.0 4.73e-01 96.5% 65.9%
3809898 6006.1.1.0 extended segments › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain 0.63 54.0 5.16e-01 96.5% 87.7%
4217340 605.1.1.131 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Val_tRNA-synt_C 0.61 52.0 5.13e-01 93.0% 91.7%
3730806 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.61 48.0 3.71e-01 86.0% 40.0%
4562953 2004.1.1.43 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SRP54 0.60 50.0 3.27e-01 100.0% 39.6%
3839497 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.60 54.0 4.71e-01 100.0% 67.1%
3629808 3291.1.1.130 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › CHDCT2 0.60 47.0 4.07e-01 87.7% 57.8%
3732397 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.59 50.0 3.91e-01 93.0% 56.7%
3681259 5058.1.1.57 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › V-SNARE 0.59 53.0 4.64e-01 100.0% 68.2%
3930816 101.1.2.236 alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.58 53.0 3.33e-01 98.2% 63.6%