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KY417925.1__APU92966.1__POI1126_38__00038

Bact-Vir

KY417925.1__APU92966.1__POI1126_38__00038

Identity

Accession:
KY417925 ↗
Kingdom:
phage

Quality

80.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Namazuvirus› Ochrobactrum_phage_POI1126

TaxID: 1932118

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 60-169
PDB
Domain cluster: rep: MW960030.1__QWY82978.1__X__00024__D5-103
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02195.27 best ParB_N 71.9 5.80e-20 94.5% 94.2%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vk1A01 3.90.1530.10 Alpha Beta › Alpha-Beta Complex › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain 0.82 60.0 6.27e-01 81.8% 81.4%
1xw3A01 3.90.1530.10 Alpha Beta › Alpha-Beta Complex › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain 0.77 60.0 6.41e-01 80.9% 94.8%
2hwjA01 3.90.1530.10 Alpha Beta › Alpha-Beta Complex › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain 0.69 57.0 5.49e-01 88.2% 81.0%
7dd9A01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.52 38.0 2.87e-01 77.3% 74.1%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4344404 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.98 75.0 7.93e-01 80.9% 86.0%
3587492 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.93 69.0 7.24e-01 76.4% 83.0%
5032171 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.93 70.0 8.01e-01 81.8% 100.0%
4928673 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.92 66.0 7.74e-01 74.5% 100.0%
3945776 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.92 77.0 8.25e-01 88.2% 100.0%
4946472 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.91 65.0 7.63e-01 74.5% 100.0%
4970064 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.91 65.0 7.58e-01 74.5% 100.0%
5071270 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.90 68.0 7.70e-01 81.8% 100.0%
3943767 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.90 68.0 7.71e-01 81.8% 100.0%
4929132 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.89 72.0 7.77e-01 83.6% 100.0%
4927766 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.89 66.0 7.53e-01 81.8% 98.8%
3942579 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.89 59.0 7.15e-01 71.8% 100.0%
4862436 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.89 72.0 7.79e-01 84.5% 100.0%
2710114 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.88 63.0 6.88e-01 74.5% 87.1%
2841795 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.88 70.0 7.71e-01 85.5% 100.0%
5049279 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.88 71.0 7.45e-01 83.6% 100.0%
4116056 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.87 61.0 6.91e-01 78.2% 92.9%
5082449 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.87 68.0 7.55e-01 83.6% 100.0%
5073612 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.86 78.0 7.98e-01 94.5% 99.0%
5052297 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.83 62.0 7.05e-01 87.3% 100.0%
4370861 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.83 72.0 7.25e-01 90.9% 91.8%
2543651 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.83 62.0 6.90e-01 80.9% 96.6%
4958363 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.82 61.0 6.91e-01 76.4% 100.0%
5052345 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.82 64.0 7.02e-01 89.1% 100.0%
3948471 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.82 72.0 7.10e-01 92.7% 92.2%
3971842 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.81 65.0 6.13e-01 83.6% 80.0%
4393138 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.81 71.0 6.93e-01 92.7% 88.3%
2061501 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.81 61.0 6.42e-01 83.6% 86.9%
2387795 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.80 60.0 6.74e-01 87.3% 98.9%
3772471 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.80 59.0 6.48e-01 76.4% 94.4%
5030163 876.1.1.4 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 0.80 63.0 6.33e-01 83.6% 100.0%
3278076 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.80 62.0 6.79e-01 80.9% 100.0%
4974679 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.79 57.0 5.85e-01 81.8% 77.9%
3946729 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.79 64.0 6.82e-01 83.6% 100.0%
3602844 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.78 60.0 5.80e-01 81.8% 72.5%
5083282 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.78 65.0 6.79e-01 88.2% 100.0%
3386516 876.1.1.4 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 0.78 65.0 4.99e-01 90.0% 100.0%
4931651 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.78 59.0 6.31e-01 84.5% 90.5%
4964225 876.1.1.4 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 0.78 62.0 5.54e-01 84.5% 100.0%
3178377 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.77 59.0 5.68e-01 80.0% 91.2%
3988408 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.77 51.0 6.12e-01 74.5% 100.0%
5069965 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.77 60.0 5.74e-01 81.8% 73.6%
4964030 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.76 57.0 5.52e-01 81.8% 70.8%
4984325 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.76 58.0 5.06e-01 80.0% 71.9%
5081788 876.1.1.4 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 0.75 61.0 6.15e-01 86.4% 100.0%
7603 876.1.1.2 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc_2 0.75 55.0 6.11e-01 80.0% 96.5%
5075504 876.1.1.4 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 0.73 52.0 5.70e-01 73.6% 100.0%
85732 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.73 61.0 5.92e-01 88.2% 86.0%
3701649 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.73 57.0 6.02e-01 81.8% 100.0%
5083737 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.73 55.0 4.89e-01 78.2% 93.3%
5018770 876.1.1.4 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 0.71 59.0 5.63e-01 88.2% 92.0%
4947338 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.71 65.0 5.32e-01 98.2% 94.7%
3283857 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.70 48.0 5.52e-01 70.0% 100.0%
3283211 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.68 51.0 4.75e-01 79.1% 82.9%
3602315 876.1.1.4 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 0.63 46.0 3.95e-01 76.4% 100.0%
3097450 304.48.1.12 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Mononeg_RNA_pol 0.55 43.0 2.99e-01 86.4% 71.4%
D2 medium residues 181-273
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vwbA00 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 57.0 5.35e-01 100.0% 95.7%
2cruA01 1.10.8.140 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PDCD5, DNA-binding domain 0.58 42.0 4.55e-01 80.6% 92.2%
4zqeA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.51 37.0 3.71e-01 77.4% 92.7%
5tj5E00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.51 37.0 3.32e-01 78.5% 80.4%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3979277 101.1.1.44 ↗ alpha arrays › HTH › HTH › Three-helical HTH › ParB 0.70 63.0 5.73e-01 100.0% 87.2%
3296440 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 46.0 4.78e-01 84.9% 95.3%
5071861 103.7.1.1 ↗ alpha arrays › RuvA-C › Hypothetical protein MTH1615 › Hypothetical protein MTH1615 › dsDNA_bind 0.57 41.0 4.07e-01 78.5% 71.0%
D3 medium residues 285-328
PDB
Domain cluster: representative
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.72 49.0 3.58e-01 72.7% 26.9%
2hhiA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.71 50.0 3.64e-01 72.7% 39.0%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.69 55.0 4.70e-01 95.5% 71.8%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.68 47.0 3.42e-01 72.7% 30.2%
1uhzA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.67 45.0 3.61e-01 70.5% 40.4%
2oyzA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 57.0 4.50e-01 100.0% 78.7%
4qt4A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.65 53.0 3.58e-01 97.7% 24.9%
4tpsA00 3.30.310.250 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA 0.65 55.0 3.92e-01 100.0% 44.3%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.65 47.0 3.75e-01 79.5% 77.2%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.64 47.0 3.22e-01 79.5% 46.2%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 55.0 3.31e-01 100.0% 37.9%
1hfeL03 3.40.950.10 Alpha Beta › 3-Layer(aba) Sandwich › Fe-only Hydrogenase (Larger Subunit); Chain L, domain 3 › Fe-only Hydrogenase (Larger Subunit); Chain L, domain 3 0.64 53.0 3.75e-01 97.7% 30.1%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 43.0 3.58e-01 70.5% 46.2%
8b4hA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 50.0 3.56e-01 100.0% 88.9%
4joiC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 47.0 3.56e-01 84.1% 47.5%
1s4uX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 52.0 3.13e-01 100.0% 22.8%
2qh0A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 51.0 3.79e-01 100.0% 76.7%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 42.0 3.63e-01 70.5% 50.7%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 52.0 3.11e-01 100.0% 22.0%
3oa4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 52.0 3.77e-01 100.0% 75.2%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.61 43.0 2.73e-01 70.5% 12.9%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 41.0 3.31e-01 70.5% 39.6%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.60 50.0 3.05e-01 100.0% 56.6%
2fiaB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 49.0 3.49e-01 100.0% 69.8%
3s6gA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 47.0 3.44e-01 97.7% 48.6%
3rmuA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 49.0 3.64e-01 100.0% 76.9%
2w01B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.59 46.0 3.11e-01 93.2% 21.8%
1z2aA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 43.0 2.93e-01 97.7% 21.3%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 48.0 2.80e-01 100.0% 21.3%
2azeB00 6.10.250.540 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 39.0 3.10e-01 81.8% 30.7%
1vybA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.58 48.0 3.11e-01 97.7% 38.6%
1r61A00 3.50.30.50 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Putative cyclase 0.58 42.0 2.75e-01 75.0% 91.2%
1nrkA01 3.30.70.1630 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 42.0 3.55e-01 97.7% 41.2%
4cllA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.57 50.0 3.22e-01 100.0% 100.0%
2xgtB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 46.0 3.68e-01 97.7% 61.4%
5cygB00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.57 47.0 2.92e-01 100.0% 16.1%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.57 44.0 3.21e-01 100.0% 73.9%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 51.0 3.95e-01 100.0% 76.9%
3zxjA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 51.0 3.05e-01 100.0% 29.2%
3m4pA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 46.0 3.54e-01 97.7% 55.4%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 46.0 3.60e-01 100.0% 75.0%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.56 45.0 3.82e-01 93.2% 57.1%
7lt2A01 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.55 39.0 2.50e-01 77.3% 15.1%
5i4dA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 44.0 3.78e-01 95.5% 73.7%
1mgtA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.54 48.0 3.83e-01 100.0% 88.6%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 44.0 3.45e-01 95.5% 66.0%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 43.0 3.32e-01 93.2% 82.1%
2gpiA00 3.30.160.140 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Shew3726-like 0.53 42.0 3.44e-01 90.9% 81.3%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 37.0 3.30e-01 77.3% 92.6%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 40.0 3.21e-01 95.5% 57.7%
5b55A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 37.0 2.62e-01 84.1% 22.1%
2uvaG01 1.20.1050.120 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 41.0 3.08e-01 100.0% 52.2%
6yiiA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.52 39.0 2.55e-01 86.4% 65.0%
6j5tB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 40.0 3.20e-01 100.0% 45.0%
2v4jB03 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 37.0 3.36e-01 81.8% 64.6%
6fh1B01 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.51 41.0 2.66e-01 100.0% 75.5%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.51 36.0 3.16e-01 77.3% 45.9%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 42.0 3.02e-01 93.2% 90.8%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.50 39.0 2.50e-01 93.2% 23.7%
2v3uA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 37.0 2.78e-01 93.2% 47.6%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3827202 5.1.11.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A 0.74 65.0 4.12e-01 100.0% 40.9%
5030555 3433.1.1.0 ↗ a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain 0.73 59.0 6.07e-01 90.9% 100.0%
4941285 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.71 55.0 4.76e-01 95.5% 54.3%
4030681 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.68 46.0 4.04e-01 70.5% 47.7%
5057701 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.67 56.0 4.01e-01 97.7% 42.2%
5044036 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.66 56.0 3.99e-01 97.7% 42.2%
3986751 3197.1.1.0 ↗ a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 0.66 48.0 3.60e-01 79.5% 30.0%
3496663 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.66 56.0 3.46e-01 100.0% 37.5%
4942967 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 55.0 3.98e-01 97.7% 43.8%
2332800 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.64 52.0 3.08e-01 95.5% 11.8%
4996269 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.64 53.0 3.39e-01 95.5% 23.6%
3377650 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 46.0 2.89e-01 79.5% 16.5%
3477283 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 44.0 3.39e-01 72.7% 37.0%
4505972 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.63 51.0 3.11e-01 100.0% 17.8%
4932495 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.63 53.0 3.78e-01 97.7% 40.7%
4946710 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.63 51.0 4.41e-01 97.7% 60.0%
4985545 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.61 51.0 4.06e-01 97.7% 62.8%
4953069 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.61 50.0 3.72e-01 97.7% 50.4%
3713627 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.61 51.0 3.11e-01 100.0% 25.0%
3676956 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.60 51.0 3.27e-01 100.0% 54.0%
3680499 5.1.4.369 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N 0.59 50.0 2.74e-01 100.0% 14.8%
5012513 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.59 46.0 3.45e-01 97.7% 43.0%
3644081 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.58 47.0 3.34e-01 95.5% 78.7%
4995609 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 48.0 3.48e-01 100.0% 44.1%
5035011 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.57 48.0 2.99e-01 93.2% 59.1%
3173378 109.4.1.338 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIC1 0.57 44.0 2.77e-01 86.4% 29.4%
5023128 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.57 45.0 3.49e-01 100.0% 49.2%
3925891 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 47.0 3.85e-01 100.0% 67.8%
4930470 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.56 43.0 3.57e-01 88.6% 62.4%
3175837 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 43.0 3.06e-01 88.6% 26.7%
5078242 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 45.0 3.30e-01 95.5% 43.1%
3271779 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 48.0 3.38e-01 100.0% 49.7%
3996686 220.1.1.47 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.55 46.0 3.27e-01 100.0% 54.0%
4547801 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 43.0 3.50e-01 88.6% 70.0%
5044376 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.55 41.0 2.54e-01 90.9% 14.8%
3627817 220.1.1.47 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.55 47.0 2.89e-01 100.0% 26.4%
3520453 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 43.0 3.26e-01 95.5% 64.6%
3590189 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.55 42.0 3.03e-01 93.2% 87.5%
5043053 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 42.0 3.41e-01 97.7% 59.0%
3783181 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.53 43.0 3.32e-01 93.2% 78.2%
3738473 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.53 41.0 3.17e-01 90.9% 93.3%
402817 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.53 38.0 3.03e-01 81.8% 96.2%
5039400 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.52 40.0 2.52e-01 93.2% 57.7%
3241195 2484.1.1.153 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1744 0.52 41.0 2.63e-01 100.0% 15.3%
1171095 3111.1.1.1 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › OST_IS 0.51 41.0 3.31e-01 93.2% 78.9%
4173773 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.51 40.0 3.33e-01 88.6% 60.7%
4875850 4967.1.1.14 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Flavi_NS5_thumb 0.51 38.0 3.18e-01 81.8% 66.7%
4027440 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.50 42.0 3.19e-01 95.5% 75.5%