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KY417925.1__APU92979.1__POI1126_53__00051

Bact-Vir

KY417925.1__APU92979.1__POI1126_53__00051

Identity

Accession:
KY417925 ↗
Kingdom:
phage

Quality

88.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Namazuvirus› Ochrobactrum_phage_POI1126

TaxID: 1932118

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-69_142-160
PDB
Domain cluster: rep: MF614627.1__ATE84625.1__phi2LM21_p08__00008__D14-73_149-166
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gsbA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 32.0 3.20e-01 93.8% 57.1%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.51 36.0 3.25e-01 75.3% 83.1%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.50 28.0 3.27e-01 95.1% 77.2%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3212141 391.1.2.9 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 0.58 37.0 3.99e-01 74.1% 75.7%
396031 4.22.1.1 ↗ beta barrels › SH3 › Hypothetical protein ORF131 › Hypothetical protein ORF131 › PSV_ORF131-like_dom 0.54 35.0 3.32e-01 98.8% 53.5%
3573585 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 31.0 3.71e-01 93.8% 88.9%
3284714 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.51 31.0 3.42e-01 79.0% 76.2%
3230503 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 36.0 2.80e-01 75.3% 43.2%
3441142 4.8.1.7 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SAWADEE 0.50 26.0 3.12e-01 75.3% 74.5%
D2 high residues 74-140
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pqsA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 54.0 5.20e-01 100.0% 100.0%
2eeiA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.61 52.0 4.55e-01 98.5% 82.1%
2edzA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.60 52.0 4.50e-01 100.0% 79.3%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 49.0 4.38e-01 98.5% 100.0%
5d8dD03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.59 50.0 5.11e-01 98.5% 100.0%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 40.0 3.24e-01 70.1% 47.4%
2wxfA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 49.0 4.23e-01 100.0% 67.2%
2hlcA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 45.0 3.97e-01 88.1% 76.9%
2kbsA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.57 49.0 4.49e-01 100.0% 92.4%
2ip4A02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.57 47.0 4.78e-01 97.0% 100.0%
2olgA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 44.0 3.61e-01 86.6% 79.1%
2orzA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 49.0 3.81e-01 100.0% 59.1%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 44.0 3.34e-01 92.5% 84.6%
3etbL00 2.60.40.810 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 47.0 3.81e-01 100.0% 68.5%
3ba3B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 38.0 3.13e-01 79.1% 75.5%
1wkyA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 44.0 3.57e-01 100.0% 95.1%
6mjjC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 3.76e-01 97.0% 82.5%
2aehA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 42.0 3.86e-01 97.0% 91.7%
5u3fB01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.51 42.0 3.50e-01 100.0% 64.3%
2xy1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 3.93e-01 100.0% 84.5%
5z06A01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.51 42.0 3.30e-01 100.0% 60.7%
3nkgA00 2.60.120.790 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.31e-01 100.0% 98.2%
2ejyA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 41.0 3.92e-01 98.5% 97.6%
6phxA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 42.0 3.83e-01 97.0% 74.7%
4czwA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 42.0 2.72e-01 100.0% 33.4%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3468176 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.64 54.0 4.28e-01 100.0% 91.0%
3926010 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 52.0 4.26e-01 100.0% 94.6%
4673680 387.1.7.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold 0.59 38.0 4.25e-01 100.0% 91.7%
5051960 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 46.0 3.67e-01 94.0% 81.9%
5041794 206.1.3.40 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_YheCD 0.57 48.0 3.23e-01 100.0% 25.1%
3472117 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 3.64e-01 100.0% 65.1%
3628597 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 47.0 3.65e-01 100.0% 72.5%
3579486 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 44.0 3.62e-01 100.0% 98.5%
3988217 241.12.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like 0.52 44.0 3.24e-01 100.0% 35.5%
3170957 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.51 40.0 3.50e-01 91.0% 88.7%
4162621 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 42.0 3.18e-01 100.0% 89.7%
3913587 10.32.1.233 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_Hemicentin 0.51 44.0 3.90e-01 100.0% 73.0%
3904330 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.51 41.0 3.63e-01 95.5% 72.7%
3399617 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.50 34.0 3.21e-01 86.6% 54.4%