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KY420199.1__APU92722.1__Pm34_38__00038
Bact-VirKY420199.1__APU92722.1__Pm34_38__00038
Identity
- Accession:
- KY420199 ↗
- Kingdom:
- phage
Quality
88.4
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 25-79
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bcyA00 | 3.40.1000.40 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 | 0.65 | 50.0 | 3.76e-01 | 85.5% | 65.8% |
| 4a55A01 | 3.10.20.770 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.60 | 48.0 | 3.07e-01 | 94.5% | 25.8% |
| 1kvdB00 | 3.30.44.10 | Alpha Beta › 2-Layer Sandwich › Smk Toxin, Beta chain › Smk Toxin, beta chain | 0.58 | 43.0 | 3.91e-01 | 81.8% | 58.4% |
| 1zc1A02 | 3.10.330.10 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.58 | 39.0 | 3.60e-01 | 81.8% | 51.9% |
| 3ir3A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 46.0 | 3.78e-01 | 100.0% | 87.3% |
| 3s1sA01 | 3.90.1570.30 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.57 | 46.0 | 3.36e-01 | 92.7% | 52.1% |
| 6ryvA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 35.0 | 3.39e-01 | 100.0% | 53.8% |
| 2kheA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.55 | 39.0 | 3.41e-01 | 78.2% | 53.9% |
| 5x6vF00 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.54 | 39.0 | 3.17e-01 | 80.0% | 41.5% |
| 2hzgB01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.54 | 40.0 | 2.99e-01 | 98.2% | 30.8% |
| 2ch0A01 | 1.10.10.1180 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAN1, winged-helix domain | 0.53 | 38.0 | 3.27e-01 | 78.2% | 65.3% |
| 3w9iA06 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.53 | 42.0 | 3.56e-01 | 96.4% | 51.0% |
| 3kzwA01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.52 | 44.0 | 3.28e-01 | 100.0% | 72.8% |
| 2jv2A00 | 3.10.330.10 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.52 | 34.0 | 3.22e-01 | 78.2% | 51.3% |
| 3pjvD01 | 3.30.110.200 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › | 0.51 | 41.0 | 3.77e-01 | 96.4% | 65.4% |
| 2lfvA00 | 3.30.70.1070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat | 0.50 | 32.0 | 2.68e-01 | 94.5% | 32.1% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5051985 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.60 | 43.0 | 3.64e-01 | 74.5% | 45.6% |
| 4365754 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.59 | 50.0 | 3.46e-01 | 100.0% | 33.8% |
| 3603693 | 101.1.2.145 ↗ | alpha arrays › HTH › HTH › winged helix domain › HHH_4 | 0.58 | 47.0 | 3.46e-01 | 96.4% | 60.6% |
| 3591796 | 602.1.1.1 ↗ | alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 | 0.57 | 40.0 | 2.66e-01 | 72.7% | 81.7% |
| 3238115 | 389.1.1.145 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › PF29138 | 0.56 | 37.0 | 3.72e-01 | 70.9% | 67.3% |
| 3481990 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.56 | 37.0 | 3.38e-01 | 78.2% | 46.3% |
| 3515746 | 2008.1.1.91 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C | 0.56 | 45.0 | 3.40e-01 | 100.0% | 33.1% |
| 5042927 | 304.51.1.22 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › PF29613 | 0.56 | 45.0 | 3.48e-01 | 90.9% | 97.7% |
| 1871398 | 206.1.3.19 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C | 0.55 | 36.0 | 3.03e-01 | 89.1% | 36.6% |
| 138730 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.55 | 39.0 | 3.41e-01 | 78.2% | 53.9% |
| 185814 | 101.1.4.12 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC | 0.54 | 39.0 | 3.47e-01 | 78.2% | 72.9% |
| 5011600 | 2008.1.1.108 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 | 0.54 | 46.0 | 3.73e-01 | 96.4% | 64.5% |
| 3741417 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.54 | 44.0 | 4.43e-01 | 94.5% | 90.9% |
| 4161847 | 102.1.1.99 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2 | 0.54 | 40.0 | 2.71e-01 | 83.6% | 33.9% |
| 3941721 | 635.1.1.1 ↗ | alpha arrays › YgfB-like › YgfB-like › YgfB-like › UPF0149 | 0.53 | 39.0 | 2.83e-01 | 81.8% | 54.2% |
| 3962549 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 38.0 | 2.86e-01 | 100.0% | 28.0% |
| 4449697 | 4019.1.1.1 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.51 | 36.0 | 2.39e-01 | 87.3% | 15.3% |
| 1762378 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.51 | 36.0 | 3.50e-01 | 80.0% | 66.2% |
| 3366822 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.51 | 42.0 | 2.70e-01 | 94.5% | 19.0% |
| 4490121 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.51 | 34.0 | 2.90e-01 | 70.9% | 55.8% |
| 3960071 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.51 | 41.0 | 2.79e-01 | 89.1% | 52.2% |
| 5038746 | 872.1.1.2 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › Dodecin | 0.51 | 42.0 | 3.95e-01 | 96.4% | 74.3% |
| 5071539 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.50 | 41.0 | 3.83e-01 | 94.5% | 72.9% |