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KY420199.1__APU92726.1__Pm34_42__00042
Bact-VirKY420199.1__APU92726.1__Pm34_42__00042
Identity
- Accession:
- KY420199 ↗
- Kingdom:
- phage
Quality
96.8
mean pLDDT
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-50
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x60A01 | 3.30.70.1070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat | 0.70 | 61.0 | 5.35e-01 | 100.0% | 100.0% |
| 4gxbA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.70 | 59.0 | 4.74e-01 | 100.0% | 48.5% |
| 2qv6B02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.69 | 58.0 | 4.40e-01 | 97.9% | 78.7% |
| 2knrA00 | 3.40.1530.20 | Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) | 0.67 | 49.0 | 3.80e-01 | 81.2% | 84.7% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.65 | 55.0 | 3.84e-01 | 100.0% | 49.7% |
| 3tmgA02 | 3.40.190.100 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Glycine betaine-binding periplasmic protein; domain 2 | 0.64 | 50.0 | 3.86e-01 | 85.4% | 73.4% |
| 1txoB00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.64 | 54.0 | 3.50e-01 | 97.9% | 65.7% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.64 | 51.0 | 5.06e-01 | 95.8% | 94.0% |
| 2xf1A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.64 | 51.0 | 3.93e-01 | 93.8% | 40.2% |
| 2h5eA03 | 3.30.70.3280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III | 0.63 | 51.0 | 3.84e-01 | 97.9% | 50.4% |
| 2iq1A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.62 | 51.0 | 3.31e-01 | 97.9% | 97.3% |
| 1xa6A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.62 | 46.0 | 3.64e-01 | 81.2% | 77.9% |
| 2gaiA03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.62 | 50.0 | 3.91e-01 | 100.0% | 94.3% |
| 1ujrA01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.62 | 52.0 | 4.45e-01 | 100.0% | 88.0% |
| 3au4A02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.61 | 50.0 | 4.19e-01 | 100.0% | 67.0% |
| 3o2sB01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 50.0 | 3.73e-01 | 100.0% | 46.3% |
| 2ec1A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 47.0 | 3.74e-01 | 97.9% | 76.3% |
| 2qyxA02 | 3.30.70.1360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like | 0.58 | 45.0 | 3.70e-01 | 100.0% | 44.2% |
| 6jebA01 | 3.30.379.10 | Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like | 0.58 | 44.0 | 3.85e-01 | 83.3% | 64.0% |
| 3e8vA00 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.57 | 46.0 | 4.03e-01 | 100.0% | 57.3% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.57 | 45.0 | 3.83e-01 | 97.9% | 56.5% |
| 5j3uA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 46.0 | 3.58e-01 | 100.0% | 51.6% |
| 3nqkA02 | 2.40.128.440 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 | 0.56 | 44.0 | 3.22e-01 | 95.8% | 83.1% |
| 2a90A01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.55 | 44.0 | 3.72e-01 | 100.0% | 75.5% |
| 4msxA02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.55 | 46.0 | 2.91e-01 | 100.0% | 80.8% |
| 2ic2A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 46.0 | 3.72e-01 | 100.0% | 57.7% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.54 | 41.0 | 3.76e-01 | 95.8% | 69.7% |
| 1twyD02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 40.0 | 3.01e-01 | 83.3% | 72.6% |
| 1f97A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 42.0 | 3.53e-01 | 100.0% | 56.9% |
| 3tm8B00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.53 | 42.0 | 2.61e-01 | 95.8% | 14.3% |
| 1nepA00 | 2.60.40.770 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 42.0 | 3.30e-01 | 100.0% | 51.5% |
| 2dt8A01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 42.0 | 3.15e-01 | 100.0% | 38.3% |
| 2i0oA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.52 | 41.0 | 2.72e-01 | 100.0% | 92.7% |
| 2mp4A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.52 | 42.0 | 3.08e-01 | 100.0% | 42.4% |
| 2kjrA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 42.0 | 3.59e-01 | 91.7% | 85.0% |
| 3lqmA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 3.62e-01 | 100.0% | 57.8% |
| 2cs4A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 41.0 | 3.44e-01 | 100.0% | 48.4% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.52 | 41.0 | 3.52e-01 | 100.0% | 57.4% |
| 4ccjA01 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.52 | 39.0 | 2.63e-01 | 100.0% | 18.3% |
| 2yjlA00 | 2.60.40.2990 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 43.0 | 3.45e-01 | 100.0% | 54.6% |
| 2v72A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 40.0 | 3.08e-01 | 100.0% | 56.9% |
| 4n2kA01 | 2.60.40.1860 | Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, N-terminal domain | 0.51 | 42.0 | 3.26e-01 | 100.0% | 52.9% |
| 4ehoB03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.51 | 36.0 | 2.58e-01 | 83.3% | 41.9% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3976762 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.76 | 65.0 | 5.61e-01 | 95.8% | 97.3% |
| 4338821 | 221.1.1.69 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SNX17-27-31_F1_FERM | 0.66 | 55.0 | 4.36e-01 | 100.0% | 44.8% |
| 4284428 | 329.1.1.1 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD | 0.65 | 49.0 | 3.68e-01 | 83.3% | 92.0% |
| 3356279 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.65 | 47.0 | 3.77e-01 | 97.9% | 38.0% |
| 4296472 | 329.1.1.1 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD | 0.64 | 48.0 | 3.36e-01 | 81.2% | 59.4% |
| 3260247 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.64 | 55.0 | 4.63e-01 | 100.0% | 94.0% |
| 4524847 | 329.1.1.1 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD | 0.64 | 48.0 | 3.56e-01 | 83.3% | 87.7% |
| 5011561 | 321.1.1.1 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Gln-synt_C | 0.63 | 54.0 | 3.32e-01 | 100.0% | 37.8% |
| 3914736 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.62 | 50.0 | 4.55e-01 | 91.7% | 100.0% |
| 4259426 | 329.1.1.1 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD | 0.61 | 46.0 | 3.38e-01 | 83.3% | 76.3% |
| 6172 | 221.1.1.73 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RASSF8-10_RA | 0.61 | 46.0 | 3.94e-01 | 100.0% | 48.8% |
| 3385387 | 109.4.1.1521 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif, E_motif | 0.61 | 47.0 | 2.67e-01 | 85.4% | 50.8% |
| 3453417 | 2492.1.1.39 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › DYW_deaminase | 0.60 | 52.0 | 3.84e-01 | 100.0% | 68.9% |
| 3366423 | 6108.1.1.11 ↗ | alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Dynamin_N | 0.60 | 49.0 | 2.79e-01 | 100.0% | 8.4% |
| 4966975 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 50.0 | 3.96e-01 | 100.0% | 56.4% |
| 3303966 | 6108.1.1.11 ↗ | alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Dynamin_N | 0.59 | 49.0 | 2.79e-01 | 100.0% | 8.8% |
| 4986312 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 50.0 | 4.01e-01 | 100.0% | 60.0% |
| 3985028 | 213.1.1.103 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Mom | 0.59 | 47.0 | 3.14e-01 | 91.7% | 32.6% |
| 3971649 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.59 | 42.0 | 2.97e-01 | 81.2% | 56.2% |
| 3645596 | 109.4.1.1476 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, E_motif | 0.58 | 45.0 | 2.54e-01 | 85.4% | 8.5% |
| 4977021 | 329.1.1.2 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › DUF4443 | 0.58 | 44.0 | 3.41e-01 | 85.4% | 50.0% |
| 4934612 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 48.0 | 3.76e-01 | 100.0% | 52.2% |
| 3958896 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.57 | 44.0 | 4.18e-01 | 91.7% | 75.0% |
| 1401773 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 46.0 | 2.82e-01 | 89.6% | 74.9% |
| 5060151 | 329.1.1.2 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › DUF4443 | 0.56 | 39.0 | 3.28e-01 | 83.3% | 38.0% |
| 3920703 | 10.12.1.40 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 | 0.56 | 42.0 | 2.62e-01 | 97.9% | 13.1% |
| 3446121 | 109.4.1.3478 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, Eplus_motif, E_motif, TPR_24 | 0.56 | 48.0 | 2.70e-01 | 100.0% | 14.3% |
| 3401548 | 221.1.1.69 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SNX17-27-31_F1_FERM | 0.56 | 44.0 | 3.72e-01 | 100.0% | 48.0% |
| 3459406 | 221.1.1.7 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBX | 0.56 | 47.0 | 3.73e-01 | 97.9% | 69.5% |
| 4867320 | 221.1.1.66 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PIK3CG_ABD | 0.55 | 44.0 | 3.55e-01 | 91.7% | 75.5% |
| 3721040 | 4176.1.1.2 ↗ | a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N | 0.55 | 46.0 | 3.05e-01 | 100.0% | 20.0% |
| 3244834 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.55 | 45.0 | 3.58e-01 | 100.0% | 52.7% |
| 3702726 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 44.0 | 3.65e-01 | 91.7% | 68.9% |
| 5070297 | 11.1.1.103 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB | 0.54 | 45.0 | 3.50e-01 | 100.0% | 48.3% |
| 3931970 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 44.0 | 3.51e-01 | 100.0% | 51.8% |
| 3939821 | 10.12.1.40 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 | 0.54 | 41.0 | 2.55e-01 | 100.0% | 12.7% |
| 5081134 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.54 | 41.0 | 3.96e-01 | 93.8% | 83.3% |
| 3390562 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.53 | 43.0 | 3.87e-01 | 93.8% | 75.7% |
| 4458441 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.53 | 39.0 | 2.89e-01 | 87.5% | 89.7% |
| 3780612 | 221.1.1.9 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PI3K_rbd,PIK3CG_ABD | 0.53 | 42.0 | 2.70e-01 | 100.0% | 29.8% |
| 3351227 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 41.0 | 2.59e-01 | 100.0% | 13.7% |
| 3216548 | 10.12.1.40 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 | 0.53 | 40.0 | 2.50e-01 | 97.9% | 12.7% |
| 4207299 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.52 | 36.0 | 3.32e-01 | 79.2% | 53.3% |
| 3933905 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.52 | 42.0 | 3.21e-01 | 100.0% | 40.0% |
| 3497076 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 41.0 | 3.48e-01 | 95.8% | 85.6% |
| 3407846 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.51 | 41.0 | 3.42e-01 | 100.0% | 85.0% |
| 3265036 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.51 | 39.0 | 3.42e-01 | 91.7% | 78.8% |
| 3533173 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.51 | 41.0 | 3.55e-01 | 91.7% | 78.8% |
| 3916476 | 221.1.1.73 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RASSF8-10_RA | 0.51 | 37.0 | 3.30e-01 | 100.0% | 50.6% |
| 3380147 | 10.12.1.16 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy | 0.50 | 35.0 | 2.42e-01 | 83.3% | 60.0% |