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KY421186.2__APZ82873.1__X__00060

Bact-Vir

KY421186.2__APZ82873.1__X__00060

Identity

Accession:
KY421186 ↗
Kingdom:
phage

Quality

81.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ficleduovirus› Flavobacterium_phage_FL-1

TaxID: 908820

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-62_176-253
PDB
Domain cluster: rep: ON453901.1__WAK79567.1__X__00040__D22-109
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.78 62.0 6.44e-01 100.0% 90.5%
3gqhA01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.51 46.0 4.32e-01 99.0% 94.3%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4982596 70.1.1.0 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.58 38.0 4.38e-01 95.1% 95.7%
D2 high residues 65-168
PDB
Domain cluster: rep: AP014887.1__BAV81054.1__X__00010__D105-206
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1el6A03 3.90.1160.10 Alpha Beta › Alpha-Beta Complex › Baseplate Structural Protein Gp11; Chain: A, domain 3 › Baseplate structural protein gp11, finger domain 0.68 61.0 6.01e-01 100.0% 93.6%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 42.0 4.70e-01 100.0% 92.6%
8a28A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 43.0 3.85e-01 100.0% 55.6%
4k7jA02 2.60.120.1360 Mainly Beta › Sandwich › Jelly Rolls › 0.57 34.0 3.22e-01 100.0% 48.0%
6on6A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 43.0 4.25e-01 100.0% 78.7%
1pj5A05 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.55 38.0 4.22e-01 98.1% 94.9%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 32.0 3.69e-01 90.4% 81.3%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.54 38.0 4.03e-01 100.0% 83.5%
1iamA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 34.0 3.71e-01 99.0% 78.3%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 33.0 3.71e-01 90.4% 82.3%
3fawA01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 36.0 3.81e-01 100.0% 80.4%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.52 32.0 3.57e-01 90.4% 78.3%
3f0hA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 34.0 3.54e-01 94.2% 71.9%
2e8yA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 36.0 3.71e-01 100.0% 75.2%
5eo9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.88e-01 100.0% 78.5%
3t05A02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.51 34.0 3.51e-01 90.4% 72.2%
1ao7B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.77e-01 100.0% 78.0%
4agrB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 45.0 4.05e-01 100.0% 93.1%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
270234 3019.1.1.2 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › GP11 0.68 61.0 6.10e-01 100.0% 97.1%
1891412 3019.1.1.1 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN 0.62 57.0 5.30e-01 100.0% 97.6%
4096826 3019.1.1.1 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN 0.62 56.0 5.56e-01 100.0% 98.2%
2106273 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.56 47.0 4.83e-01 99.0% 95.1%
3261298 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 36.0 3.89e-01 100.0% 78.8%
5038126 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.55 35.0 3.97e-01 100.0% 88.0%
4492101 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.54 41.0 4.37e-01 92.3% 94.4%
3798658 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.54 40.0 4.05e-01 100.0% 79.0%
4864011 1.1.7.41 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.54 37.0 3.77e-01 90.4% 71.4%
4272556 11.1.1.335 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgB_N 0.53 34.0 3.55e-01 99.0% 70.5%
3883937 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.53 36.0 3.74e-01 100.0% 76.8%
3268380 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 34.0 3.78e-01 100.0% 88.7%
3275414 11.1.1.802 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 0.51 34.0 3.64e-01 100.0% 82.4%
3251007 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 33.0 3.66e-01 100.0% 86.3%
3239031 1.1.8.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.50 38.0 3.96e-01 100.0% 88.4%