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KY421186.2__APZ82900.1__X__00078

Bact-Vir

KY421186.2__APZ82900.1__X__00078

Identity

Accession:
KY421186 ↗
Kingdom:
phage

Quality

74.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ficleduovirus› Flavobacterium_phage_FL-1

TaxID: 908820

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 53-118
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jllB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.64 50.0 3.87e-01 87.9% 67.1%
6melB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.62 48.0 3.74e-01 87.9% 46.5%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 38.0 3.69e-01 100.0% 59.7%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 37.0 3.85e-01 100.0% 74.2%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 44.0 4.18e-01 86.4% 81.2%
2k31A00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 42.0 3.37e-01 87.9% 69.1%
3p8aA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 38.0 2.96e-01 78.8% 93.8%
1jb0E00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 4.20e-01 100.0% 85.5%
3rmhB00 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 42.0 3.45e-01 92.4% 90.2%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4060185 206.1.3.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_2 0.64 51.0 3.46e-01 87.9% 41.6%
3387976 223.1.1.51 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.64 50.0 3.90e-01 84.8% 89.0%
2469828 206.1.3.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_2 0.63 50.0 3.47e-01 87.9% 30.8%
None — 0.62 48.0 3.40e-01 86.4% 32.9%
3181799 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.61 49.0 3.65e-01 87.9% 59.4%
5069207 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.60 45.0 3.44e-01 86.4% 56.1%
4926941 206.1.3.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_2 0.58 46.0 3.25e-01 87.9% 29.5%
2104079 244.4.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › PF27537 0.58 37.0 4.30e-01 72.7% 97.8%
3651459 375.1.1.191 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_GRF 0.57 37.0 4.07e-01 74.2% 100.0%
3941239 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.56 46.0 2.74e-01 89.4% 22.8%
3781383 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 39.0 3.53e-01 100.0% 53.3%
3198094 295.1.1.1 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.56 44.0 4.15e-01 86.4% 82.5%
3195479 316.1.1.10 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap 0.55 40.0 2.70e-01 77.3% 64.9%
3852038 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.55 47.0 4.40e-01 93.9% 78.8%
3579468 71.1.1.21 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF25897 0.55 40.0 2.84e-01 80.3% 76.5%
3414096 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 45.0 3.68e-01 93.9% 78.5%
3404654 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 3.61e-01 100.0% 85.8%
3924081 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.54 45.0 3.58e-01 95.5% 75.0%
5034195 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 36.0 3.81e-01 87.9% 87.3%
3691681 2.1.1.25 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.52 43.0 3.55e-01 95.5% 86.2%
5044924 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.52 38.0 3.22e-01 77.3% 89.1%
5000848 802.1.1.1 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.52 44.0 3.48e-01 100.0% 56.7%
3864913 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.52 39.0 3.03e-01 81.8% 79.4%
3743024 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.52 42.0 3.43e-01 89.4% 79.2%
3460699 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 41.0 3.89e-01 93.9% 82.4%
3243986 220.1.1.79 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › TBC1D23_C 0.51 41.0 3.69e-01 97.0% 80.0%
3711065 330.1.1.22 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 0.51 40.0 3.44e-01 89.4% 60.0%