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KY421186.2__APZ82920.1__X__00038

Bact-Vir

KY421186.2__APZ82920.1__X__00038

Identity

Accession:
KY421186 ↗
Kingdom:
phage

Quality

86.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ficleduovirus› Flavobacterium_phage_FL-1

TaxID: 908820

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-65
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.75 55.0 5.85e-01 100.0% 88.5%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 53.0 5.64e-01 100.0% 92.0%
2xkoC01 2.30.30.660 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3539) 0.71 50.0 5.38e-01 91.5% 89.6%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 60.0 5.31e-01 100.0% 67.9%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 51.0 5.13e-01 100.0% 81.4%
2ew0A00 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.66 59.0 4.19e-01 100.0% 78.9%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.64 56.0 3.96e-01 100.0% 73.9%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.63 52.0 5.05e-01 100.0% 80.6%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.62 56.0 3.77e-01 100.0% 28.2%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 42.0 3.62e-01 100.0% 45.6%
3lq6A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.61 49.0 4.04e-01 89.8% 95.6%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 52.0 5.25e-01 100.0% 93.2%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.61 54.0 3.66e-01 100.0% 34.1%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.60 55.0 3.81e-01 100.0% 39.5%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 54.0 4.78e-01 100.0% 78.3%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 51.0 4.94e-01 100.0% 90.9%
2hjjA00 3.30.160.130 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains 0.57 36.0 3.54e-01 79.7% 57.6%
3q39B02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.56 45.0 3.76e-01 89.8% 95.5%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.56 47.0 3.70e-01 93.2% 76.2%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.55 48.0 4.02e-01 100.0% 94.3%
3wodG00 2.30.30.1250 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 3.51e-01 89.8% 55.1%
3e8lC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 45.0 3.38e-01 100.0% 88.6%
1lopA00 2.40.100.10 Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like 0.54 43.0 3.28e-01 94.9% 91.5%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 44.0 3.31e-01 100.0% 83.6%
7knlA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.54 45.0 3.72e-01 98.3% 76.3%
6ygnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 40.0 3.30e-01 84.7% 71.3%
3gekA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 41.0 3.21e-01 88.1% 79.4%
3v8uA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.52 42.0 3.18e-01 100.0% 92.2%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.51 40.0 3.10e-01 86.4% 43.0%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.51 39.0 3.43e-01 86.4% 53.3%
4gf3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 43.0 3.49e-01 98.3% 61.8%
3pquA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.51 42.0 3.11e-01 96.6% 47.5%
3holA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.51 42.0 3.15e-01 96.6% 48.2%
3zh8C01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 40.0 3.25e-01 88.1% 78.3%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5040416 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 61.0 6.53e-01 100.0% 86.0%
3603357 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 63.0 6.52e-01 100.0% 81.8%
4952887 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 59.0 6.16e-01 100.0% 78.2%
4995678 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 63.0 6.54e-01 100.0% 87.3%
4980648 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 61.0 5.71e-01 100.0% 65.7%
4975150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 60.0 6.05e-01 100.0% 76.7%
5013892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 60.0 6.23e-01 100.0% 83.6%
3302818 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.80 57.0 5.86e-01 100.0% 80.0%
4579331 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 55.0 5.39e-01 100.0% 71.4%
4995784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 60.0 5.55e-01 100.0% 69.3%
4536562 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 56.0 5.20e-01 100.0% 64.0%
3948255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 57.0 4.36e-01 100.0% 37.7%
3295685 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.73 66.0 5.30e-01 100.0% 67.3%
3578208 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 57.0 5.89e-01 100.0% 89.1%
4014881 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 60.0 5.99e-01 100.0% 88.3%
3482559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 55.0 3.97e-01 100.0% 30.6%
3412823 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.69 48.0 5.01e-01 91.5% 80.0%
2321269 4.1.1.46 ↗ beta barrels › SH3 › SH3 › SH3 › VEG 0.68 60.0 5.31e-01 100.0% 67.9%
5022491 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.68 54.0 4.81e-01 100.0% 61.2%
3523646 6.1.1.11 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin 0.66 57.0 4.54e-01 100.0% 100.0%
3930014 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.65 53.0 3.78e-01 89.8% 31.9%
3621272 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.65 53.0 4.10e-01 91.5% 43.0%
4193599 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 57.0 4.71e-01 100.0% 59.0%
3300226 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.64 58.0 5.23e-01 100.0% 90.0%
3357239 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.64 58.0 4.19e-01 100.0% 45.6%
3279614 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.64 52.0 3.81e-01 100.0% 34.2%
3816455 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.63 57.0 4.42e-01 100.0% 57.6%
3514522 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.63 57.0 5.22e-01 100.0% 88.0%
3938415 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 55.0 5.40e-01 100.0% 95.4%
3950458 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.60 49.0 3.43e-01 88.1% 39.4%
3624228 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 52.0 4.86e-01 100.0% 96.0%
3729666 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 52.0 4.32e-01 100.0% 53.6%
5023947 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.60 50.0 3.52e-01 89.8% 41.2%
3306580 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 52.0 5.17e-01 93.2% 96.7%
3217772 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 53.0 4.69e-01 100.0% 84.7%
3994911 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 51.0 4.28e-01 100.0% 85.7%
3937046 9.2.1.5 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF7043 0.59 52.0 4.30e-01 98.3% 81.0%
None — 0.58 48.0 3.18e-01 88.1% 33.2%
None — 0.58 48.0 3.18e-01 88.1% 33.8%
3489469 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 51.0 4.25e-01 100.0% 80.0%
3939490 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.58 47.0 2.95e-01 88.1% 94.4%
3934655 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 51.0 4.52e-01 100.0% 98.8%
5063188 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.57 49.0 3.28e-01 93.2% 35.3%
3945586 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.57 46.0 2.98e-01 91.5% 29.8%
3228256 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.57 48.0 3.14e-01 96.6% 38.9%
3239417 234.3.1.0 ↗ a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.56 47.0 3.65e-01 94.9% 45.9%
5018124 9.2.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.56 49.0 4.40e-01 100.0% 82.4%
3486056 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 45.0 3.37e-01 91.5% 35.1%
4152335 9.2.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin 0.55 47.0 3.78e-01 100.0% 89.5%
1063578 9.2.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin 0.55 48.0 3.99e-01 100.0% 94.3%
135832 6.1.1.2 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Kunitz_legume 0.55 45.0 3.38e-01 100.0% 88.6%
3338857 246.3.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.54 42.0 3.03e-01 84.7% 30.9%
3839768 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 42.0 2.61e-01 86.4% 18.3%
4492958 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 42.0 3.56e-01 89.8% 82.9%
3344144 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 42.0 3.72e-01 84.7% 73.8%