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KY421186.2__APZ82923.1__X__00009

Bact-Vir

KY421186.2__APZ82923.1__X__00009

Identity

Accession:
KY421186 ↗
Kingdom:
phage

Quality

87.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ficleduovirus› Flavobacterium_phage_FL-1

TaxID: 908820

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-57
PDB
Domain cluster: rep: NC_031938.1__YP_009324565.1__BOW78_gp42__00042__D56-104
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5agaA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 44.0 2.91e-01 70.0% 90.6%
5dynA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 45.0 3.65e-01 78.0% 82.1%
4c5wA02 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.57 43.0 2.73e-01 84.0% 50.2%
7vjvA01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.55 37.0 2.48e-01 100.0% 16.9%
2v0uA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 42.0 3.06e-01 86.0% 63.7%
3vmmA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 39.0 2.93e-01 80.0% 49.6%
4evxA00 1.10.1740.240 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.54 44.0 3.73e-01 100.0% 75.3%
3nznA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 44.0 3.60e-01 100.0% 79.6%
6fgcA02 3.90.105.10 Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › Molybdopterin biosynthesis moea protein, domain 2 0.50 37.0 3.60e-01 100.0% 72.4%
4dzoA02 3.30.457.60 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.50 36.0 3.20e-01 78.0% 64.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3734167 2002.1.1.8 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Cellulase 0.62 43.0 2.44e-01 72.0% 29.6%
286894 5101.1.1.1 ↗ alpha arrays › C-terminal helical domain of RNA helicase › C-terminal helical domain of RNA helicase › C-terminal helical domain of RNA helicase › Flav_NS3-hel_C 0.59 41.0 3.14e-01 80.0% 34.0%
4617429 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 42.0 4.10e-01 78.0% 90.9%
3340031 4.1.1.295 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 0.56 44.0 3.24e-01 86.0% 71.1%
139877 10.12.1.12 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › TauD 0.56 43.0 2.78e-01 84.0% 54.5%
None — 0.56 44.0 2.90e-01 90.0% 94.3%
3950741 223.3.1.3 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.55 47.0 2.83e-01 100.0% 43.3%
3965265 110.2.1.0 ↗ alpha arrays › DEATH domain › Replication modulator SeqA-C › Replication modulator SeqA-C 0.54 44.0 3.75e-01 92.0% 97.6%
3283393 223.3.1.3 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.54 47.0 2.81e-01 100.0% 43.3%
3396952 10.12.1.12 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › TauD 0.54 43.0 2.70e-01 90.0% 82.1%
5023430 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.51 43.0 4.10e-01 100.0% 81.7%
5037204 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.51 36.0 2.88e-01 82.0% 80.0%