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KY448244.1__AQT28522.1__YOLOSWAG_37__00037

Bact-Vir

KY448244.1__AQT28522.1__YOLOSWAG_37__00037

Identity

Accession:
KY448244 ↗
Kingdom:
phage

Quality

93.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 55-112
PDB
Domain cluster: representative
CATH (62)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.83 66.0 5.63e-01 100.0% 54.3%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.82 66.0 6.77e-01 94.8% 90.9%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.78 59.0 6.00e-01 100.0% 82.5%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.74 51.0 5.66e-01 84.5% 91.3%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 58.0 5.82e-01 96.6% 84.7%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 57.0 5.81e-01 98.3% 87.5%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.71 56.0 4.37e-01 100.0% 38.9%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 59.0 5.73e-01 96.6% 84.1%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 57.0 5.52e-01 96.6% 80.3%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 62.0 5.73e-01 98.3% 89.2%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.70 54.0 5.60e-01 96.6% 88.9%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 55.0 5.13e-01 100.0% 69.9%
2i5hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 52.0 4.86e-01 82.8% 88.9%
3po3S02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.68 49.0 4.55e-01 77.6% 62.2%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 58.0 5.40e-01 98.3% 76.0%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 50.0 5.48e-01 91.4% 100.0%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 51.0 4.32e-01 98.3% 49.0%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 58.0 4.77e-01 100.0% 55.6%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.66 51.0 3.96e-01 84.5% 70.6%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.66 50.0 3.22e-01 81.0% 19.6%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 56.0 5.28e-01 96.6% 79.7%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 60.0 5.33e-01 100.0% 73.4%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 60.0 5.97e-01 100.0% 98.3%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 52.0 5.02e-01 96.6% 78.5%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 58.0 5.41e-01 100.0% 83.3%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.64 45.0 4.31e-01 87.9% 64.2%
2xglA00 3.10.450.300 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein 0.64 48.0 4.26e-01 84.5% 80.2%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 56.0 5.56e-01 96.6% 96.7%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 56.0 5.09e-01 100.0% 84.4%
3pvlA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 56.0 5.10e-01 100.0% 82.9%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 44.0 3.51e-01 96.6% 35.7%
1x3zA04 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 45.0 4.62e-01 77.6% 96.3%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.61 48.0 4.27e-01 87.9% 91.9%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 52.0 4.84e-01 96.6% 77.3%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.60 43.0 4.61e-01 81.0% 95.8%
3c7fA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 52.0 3.19e-01 100.0% 82.3%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 53.0 4.10e-01 100.0% 98.4%
1qe0A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.59 48.0 4.14e-01 89.7% 94.5%
1nj1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.58 50.0 4.05e-01 93.1% 91.3%
3netB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.58 49.0 4.12e-01 93.1% 88.8%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.58 45.0 4.61e-01 86.2% 96.4%
1gofA02 2.130.10.80 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Galactose oxidase/kelch, beta-propeller 0.58 49.0 3.03e-01 100.0% 84.0%
2j3lA01 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.58 49.0 3.89e-01 93.1% 80.5%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.57 41.0 4.46e-01 75.9% 100.0%
2gpiA00 3.30.160.140 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Shew3726-like 0.57 44.0 3.82e-01 84.5% 79.1%
1gqeA03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 42.0 3.86e-01 82.8% 69.9%
3e0jA01 3.60.21.50 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › 0.56 40.0 2.60e-01 77.6% 94.3%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.55 40.0 3.26e-01 81.0% 90.3%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 42.0 2.77e-01 100.0% 17.2%
1cl7I00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.62e-01 77.6% 86.6%
3iwaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 49.0 3.62e-01 100.0% 47.8%
1ufvA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.55 37.0 3.21e-01 70.7% 82.8%
4jr7A02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 45.0 3.59e-01 93.1% 87.5%
2rsmA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 40.0 3.29e-01 82.8% 47.0%
2kjkA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 44.0 3.82e-01 100.0% 84.0%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.13e-01 100.0% 64.1%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.52 42.0 3.05e-01 98.3% 30.4%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.51 41.0 3.32e-01 93.1% 44.2%
4jzsA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 41.0 3.11e-01 94.8% 89.9%
2jn9A01 2.40.30.80 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YkvR-like 0.51 38.0 3.29e-01 81.0% 95.6%
2o18A00 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.50 41.0 2.72e-01 100.0% 34.2%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.50 41.0 3.43e-01 100.0% 70.9%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4994957 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.94 74.0 7.64e-01 100.0% 87.3%
3987601 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.91 73.0 7.89e-01 91.4% 98.0%
5017214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.90 69.0 7.11e-01 100.0% 85.5%
4946165 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.90 69.0 7.11e-01 100.0% 85.5%
5023740 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 63.0 6.72e-01 100.0% 90.0%
4478971 4.1.1.174 beta barrels › SH3 › SH3 › SH3 › DUF951 0.82 71.0 6.82e-01 100.0% 81.5%
4628460 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 76.0 6.07e-01 100.0% 66.7%
4420340 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 66.0 6.56e-01 100.0% 85.0%
3510526 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 63.0 6.46e-01 96.6% 89.1%
3821751 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.76 65.0 5.84e-01 98.3% 68.8%
4519674 4.1.1.186 beta barrels › SH3 › SH3 › SH3 › DUF5397 0.75 62.0 6.26e-01 98.3% 91.4%
3620947 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.75 58.0 5.92e-01 84.5% 87.3%
3261235 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 66.0 5.71e-01 100.0% 65.9%
3458064 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.72 54.0 5.64e-01 81.0% 92.5%
3507003 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 63.0 5.81e-01 100.0% 90.7%
3704822 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 51.0 3.67e-01 77.6% 28.2%
4949552 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 51.0 4.74e-01 75.9% 67.1%
3582834 4.1.1.319 beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.68 59.0 5.07e-01 100.0% 67.4%
3226615 4.1.1.389 beta barrels › SH3 › SH3 › SH3 › PF30352 0.67 57.0 4.84e-01 98.3% 57.9%
3750522 4.1.1.218 beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N 0.66 59.0 4.79e-01 100.0% 88.2%
3557649 4.8.1.20 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N 0.66 59.0 4.85e-01 100.0% 92.4%
3705742 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.66 49.0 4.92e-01 81.0% 79.3%
4946993 4.1.1.479 beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.66 56.0 5.33e-01 96.6% 81.4%
3940233 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 58.0 4.68e-01 98.3% 55.5%
4991994 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 49.0 5.03e-01 81.0% 92.7%
4965032 375.1.1.343 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7835 0.65 48.0 4.93e-01 79.3% 100.0%
3483489 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 55.0 5.12e-01 96.6% 76.0%
3774525 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.65 51.0 3.62e-01 86.2% 48.9%
3539717 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 46.0 4.47e-01 75.9% 86.2%
3894798 4.1.1.243 beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.65 47.0 5.16e-01 84.5% 100.0%
3643549 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.64 53.0 4.83e-01 93.1% 68.8%
3399965 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 58.0 4.97e-01 100.0% 67.8%
3937157 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.64 54.0 5.10e-01 94.8% 88.6%
3931161 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 56.0 4.49e-01 98.3% 56.5%
4357396 2.1.1.84 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_N 0.64 52.0 4.26e-01 91.4% 66.4%
3215090 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 48.0 4.70e-01 84.5% 100.0%
4931072 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.63 54.0 5.09e-01 98.3% 80.0%
3948516 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.62 50.0 4.83e-01 87.9% 98.5%
4830342 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.62 55.0 3.90e-01 100.0% 89.2%
3512466 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 48.0 3.87e-01 87.9% 75.2%
3635007 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.62 46.0 3.67e-01 82.8% 46.4%
3378383 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 42.0 4.69e-01 72.4% 100.0%
4514268 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.61 49.0 4.32e-01 91.4% 65.2%
4966836 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 48.0 4.94e-01 94.8% 94.5%
3315166 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.61 53.0 4.64e-01 100.0% 93.3%
3463266 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.60 44.0 4.39e-01 81.0% 90.0%
4218691 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.60 50.0 4.30e-01 91.4% 100.0%
3903350 386.1.1.280 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF27047 0.59 48.0 4.71e-01 91.4% 83.1%
3372819 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.59 43.0 3.73e-01 81.0% 60.0%
4022211 2003.1.2.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.59 52.0 3.24e-01 100.0% 49.7%
4959991 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 42.0 4.07e-01 86.2% 68.6%
3205743 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.58 41.0 3.28e-01 75.9% 45.0%
3581093 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.58 48.0 4.42e-01 96.6% 83.7%
3968921 5.1.3.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PhoX 0.57 50.0 2.88e-01 100.0% 60.2%
3739035 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 46.0 4.60e-01 89.7% 98.3%
None 0.57 49.0 4.14e-01 96.6% 93.9%
4616279 375.1.1.95 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_13 0.56 41.0 4.03e-01 82.8% 90.8%
3688824 318.1.1.0 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.56 42.0 3.76e-01 89.7% 57.9%
3606532 2484.6.1.0 mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR 0.55 44.0 3.85e-01 89.7% 58.9%
3598807 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 47.0 4.51e-01 98.3% 91.3%
3733469 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.54 37.0 2.91e-01 74.1% 37.9%
3600914 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.54 45.0 2.81e-01 94.8% 22.5%
3925731 4.1.1.41 beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.54 44.0 3.23e-01 98.3% 33.0%
5052424 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.54 40.0 3.15e-01 84.5% 38.6%
5018209 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 37.0 3.72e-01 77.6% 98.3%
3593768 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 42.0 3.70e-01 100.0% 60.0%
3785031 4.1.1.41 beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.51 42.0 3.15e-01 98.3% 34.5%
3242790 206.1.3.3 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N 0.51 39.0 2.62e-01 91.4% 58.6%
D2 medium residues 1-51
PDB
Domain cluster: representative