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KY448244.1__AQT28691.1__YOLOSWAG_213__00213

Bact-Vir

KY448244.1__AQT28691.1__YOLOSWAG_213__00213

Identity

Accession:
KY448244 ↗
Kingdom:
phage

Quality

70.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yoloswagvirus› Erwinia_phage_vB_EamM_Yoloswag

TaxID: 1958956

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-131
PDB
D2 high residues 166-286_466-502
PDB
Domain cluster: rep: MH460463.1__AXG67258.1__AD1_214__00214__D1-142
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a98A02 1.20.1270.350 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain 0.59 33.0 4.34e-01 75.3% 98.9%
1darA05 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 27.0 3.47e-01 84.8% 81.6%
7oq4Z01 1.20.120.950 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 0.54 30.0 3.82e-01 82.3% 89.8%
3afgB01 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.51 27.0 3.39e-01 78.5% 87.4%
D3 high residues 289-422
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 25.0 3.23e-01 81.3% 63.1%
3um7A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 38.0 4.26e-01 92.5% 89.3%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.55 33.0 3.64e-01 98.5% 71.2%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 25.0 3.09e-01 87.3% 69.0%
3zx4A02 3.30.980.20 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Putative mannosyl-3-phosphoglycerate phosphatase; domain 2 0.53 29.0 3.48e-01 98.5% 80.5%
4kc9A02 1.20.120.1750 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.52 33.0 2.88e-01 96.3% 38.5%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.52 35.0 3.86e-01 93.3% 89.2%
1m2vB01 1.20.120.730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sec23/Sec24 helical domain 0.52 34.0 3.12e-01 77.6% 51.5%
4by6D02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 29.0 2.46e-01 74.6% 31.6%
2ce7B03 1.20.58.760 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Peptidase M41 0.51 44.0 4.14e-01 99.3% 75.6%
4kdyB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 28.0 3.48e-01 100.0% 90.0%
4g6qA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 31.0 3.66e-01 91.8% 93.1%
5eroA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.50 39.0 3.09e-01 83.6% 75.1%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4339648 101.1.2.852 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27213 0.57 32.0 3.76e-01 74.6% 76.8%
3851383 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.57 43.0 3.29e-01 94.8% 34.4%
3936764 5050.1.1.8 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › FPN1 0.54 40.0 3.43e-01 76.9% 92.7%
4012784 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.54 26.0 3.58e-01 72.4% 93.8%
4833627 3143.1.1.2 ↗ alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Papaya mosaic virus capsid protein › Poty_coat 0.54 32.0 2.99e-01 81.3% 46.9%
4575479 3281.1.1.1 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.53 47.0 3.28e-01 98.5% 79.1%
4075176 167.1.1.1 ↗ alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 0.53 33.0 3.12e-01 94.8% 51.2%
3742801 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.52 29.0 3.68e-01 73.1% 100.0%
3945367 5050.1.1.1 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.52 45.0 3.74e-01 94.8% 91.1%
4958610 5065.1.1.2 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.52 40.0 2.98e-01 82.1% 57.7%
3740494 5001.1.1.6 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Bac_rhodopsin 0.50 42.0 3.53e-01 91.8% 57.1%
3600869 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.50 35.0 3.80e-01 91.0% 85.2%
D4 medium residues 503-552
PDB