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KY448244.1__AQT28748.1__YOLOSWAG_276__00276

Bact-Vir

KY448244.1__AQT28748.1__YOLOSWAG_276__00276

Identity

Accession:
KY448244 ↗
Kingdom:
phage

Quality

80.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yoloswagvirus› Erwinia_phage_vB_EamM_Yoloswag

TaxID: 1958956

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-117
PDB
Domain cluster: rep: NC_051679.1__YP_009959344.1__I5H59_gp79__00079__D6-95
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dn6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 37.0 3.52e-01 78.6% 46.1%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 39.0 3.70e-01 80.6% 49.6%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 39.0 3.53e-01 81.6% 47.3%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 38.0 3.40e-01 81.6% 45.4%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.59 42.0 4.27e-01 74.5% 93.9%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 34.0 3.35e-01 72.4% 52.8%
1x1fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 30.0 2.60e-01 72.4% 33.6%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.56 49.0 3.58e-01 100.0% 60.4%
3ko2A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 37.0 3.24e-01 70.4% 54.0%
3d3bJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 31.0 3.29e-01 81.6% 63.2%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 47.0 3.33e-01 96.9% 32.2%
3vr0A00 3.40.50.10900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit 0.54 42.0 3.26e-01 87.8% 81.1%
1rtqA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 46.0 3.37e-01 99.0% 62.2%
1egaA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.53 40.0 3.95e-01 81.6% 84.0%
1q9uA00 3.30.310.70 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TT1751-like domain 0.53 44.0 4.13e-01 95.9% 76.6%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.52 39.0 4.00e-01 81.6% 81.9%
1ie0A00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.52 42.0 3.66e-01 89.8% 69.2%
1vw4502 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 39.0 4.05e-01 94.9% 87.0%
2nyiA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 33.0 3.62e-01 83.7% 79.0%
1y7pB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 34.0 3.73e-01 82.7% 82.5%
1j3mA00 3.30.310.70 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TT1751-like domain 0.52 44.0 4.06e-01 95.9% 79.5%
4aw8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 38.0 3.19e-01 80.6% 79.6%
3s1tA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 34.0 3.67e-01 83.7% 82.5%
2f06A00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.51 31.0 2.72e-01 79.6% 39.6%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.51 45.0 3.41e-01 100.0% 39.8%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 2.91e-01 100.0% 49.1%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.51 33.0 3.82e-01 79.6% 97.1%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 3.20e-01 70.4% 92.4%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.50 33.0 3.55e-01 79.6% 78.6%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.50 33.0 3.45e-01 78.6% 73.0%
4xchA00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.50 42.0 3.75e-01 95.9% 70.5%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 39.0 3.66e-01 83.7% 96.7%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.50 36.0 3.27e-01 75.5% 99.3%
1nyeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.50 37.0 3.33e-01 78.6% 57.3%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3778852 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.71 40.0 3.53e-01 81.6% 39.3%
3779393 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.67 38.0 3.49e-01 82.7% 43.1%
3312151 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 41.0 3.54e-01 81.6% 39.4%
3490456 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 44.0 3.86e-01 79.6% 46.2%
3567875 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.66 37.0 3.18e-01 81.6% 34.4%
3251922 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 43.0 3.91e-01 82.7% 52.0%
3801480 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 39.0 3.33e-01 80.6% 38.1%
3742074 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 36.0 3.21e-01 79.6% 38.8%
3712216 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.64 42.0 4.42e-01 82.7% 73.3%
3313182 327.11.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.62 40.0 4.64e-01 85.7% 92.9%
4405445 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 40.0 4.53e-01 84.7% 97.1%
197096 310.3.1.1 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilO 0.59 42.0 3.82e-01 74.5% 68.9%
3784088 331.3.1.30 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3074 0.57 45.0 3.55e-01 87.8% 91.5%
3825019 327.5.1.4 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › GH3_C 0.56 43.0 4.21e-01 80.6% 84.8%
862039 327.5.1.4 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › GH3_C 0.56 44.0 3.81e-01 81.6% 89.7%
3349201 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.55 48.0 3.83e-01 96.9% 85.5%
3994634 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.55 49.0 3.37e-01 96.9% 29.8%
3965108 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.55 40.0 3.26e-01 77.6% 99.0%
3924669 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 35.0 3.54e-01 83.7% 64.2%
3342304 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 42.0 3.59e-01 84.7% 51.6%
5038486 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.54 42.0 3.36e-01 84.7% 41.0%
3934685 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 38.0 4.10e-01 80.6% 84.7%
4957038 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.54 46.0 3.26e-01 93.9% 30.2%
4978072 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.54 46.0 4.47e-01 99.0% 85.5%
4160518 3016.1.1.11 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SelA 0.53 46.0 4.57e-01 100.0% 100.0%
3249882 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 40.0 4.11e-01 80.6% 97.9%
6342 331.5.1.1 ↗ a+b two layers › TBP-like › TT1751-like › TT1751-like › DUF302 0.53 44.0 4.13e-01 95.9% 76.6%
None — 0.52 44.0 3.02e-01 93.9% 91.7%
4963107 331.5.1.1 ↗ a+b two layers › TBP-like › TT1751-like › TT1751-like › DUF302 0.52 44.0 4.02e-01 96.9% 74.1%
4333285 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.52 43.0 3.31e-01 92.9% 81.7%
4941686 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.52 31.0 3.55e-01 76.5% 82.9%
4962811 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 35.0 3.77e-01 83.7% 82.5%
3934023 3343.1.1.1 ↗ alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal 0.51 46.0 2.80e-01 100.0% 24.4%
3720721 304.113.1.1 ↗ a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain › GATase_2 0.51 39.0 3.64e-01 80.6% 83.3%
3187898 59.1.1.8 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › TFIIF_beta_N 0.51 39.0 3.68e-01 81.6% 88.0%
4936075 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.51 33.0 3.64e-01 80.6% 81.2%
3550395 330.1.1.10 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.51 35.0 3.68e-01 78.6% 78.9%
3232018 304.12.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.50 38.0 3.40e-01 81.6% 55.9%
3632109 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.50 35.0 3.43e-01 79.6% 63.6%