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KY448244.1__AQT28783.1__YOLOSWAG_314__00314

Bact-Vir

KY448244.1__AQT28783.1__YOLOSWAG_314__00314

Identity

Accession:
KY448244 ↗
Kingdom:
phage

Quality

57.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yoloswagvirus› Erwinia_phage_vB_EamM_Yoloswag

TaxID: 1958956

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 174-225
PDB
D2 high residues 248-349
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 40.0 4.20e-01 73.5% 60.4%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 40.0 4.37e-01 75.5% 70.6%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.11e-01 88.2% 57.4%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 33.0 3.90e-01 74.5% 80.3%
3s6pA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.58 43.0 3.87e-01 77.5% 85.2%
6a6eA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.58 43.0 3.22e-01 79.4% 95.8%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.58 30.0 3.91e-01 99.0% 94.4%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.57 46.0 4.31e-01 86.3% 77.2%
4n81A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.57 39.0 3.56e-01 70.6% 68.4%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 4.28e-01 72.5% 93.8%
1g5hB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 44.0 4.40e-01 86.3% 88.8%
4lw2A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.54 41.0 3.08e-01 81.4% 99.2%
3fo5B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 43.0 3.42e-01 90.2% 81.5%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 31.0 3.96e-01 100.0% 100.0%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 30.0 3.71e-01 100.0% 90.6%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 33.0 3.74e-01 100.0% 82.3%
3netB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.52 41.0 4.17e-01 84.3% 88.8%
1adjB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.52 40.0 4.15e-01 85.3% 90.4%
3d5pA00 3.40.1580.10 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like 0.51 38.0 3.57e-01 82.4% 78.9%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 36.0 3.20e-01 76.5% 95.7%
1sb7A02 3.30.2340.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › TruD, insertion domain 0.50 35.0 3.24e-01 73.5% 66.2%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4992872 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 39.0 5.12e-01 70.6% 96.4%
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 46.0 5.51e-01 71.6% 98.5%
5013892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 39.0 5.15e-01 70.6% 98.2%
5036616 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.73 44.0 5.13e-01 75.5% 87.1%
5033075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 38.0 4.95e-01 73.5% 94.5%
4980648 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 43.0 5.03e-01 72.5% 85.7%
5058671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 38.0 4.91e-01 73.5% 94.5%
4967397 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 44.0 5.29e-01 75.5% 96.9%
4936253 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 42.0 4.90e-01 75.5% 85.7%
4015071 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 42.0 4.97e-01 72.5% 87.1%
5060760 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.70 42.0 5.07e-01 75.5% 93.8%
4950396 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 36.0 4.66e-01 73.5% 90.9%
3302818 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.70 37.0 4.78e-01 70.6% 94.5%
5066141 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.70 41.0 4.98e-01 74.5% 92.3%
4026678 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.70 43.0 5.04e-01 76.5% 90.0%
5063537 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.69 38.0 4.79e-01 72.5% 91.7%
3947085 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.69 41.0 4.83e-01 75.5% 85.7%
3684909 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.69 38.0 4.85e-01 84.3% 98.2%
3839083 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.69 41.0 4.79e-01 75.5% 85.7%
4011604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.68 42.0 4.87e-01 72.5% 85.3%
4060455 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 40.0 4.69e-01 75.5% 85.7%
4964421 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 40.0 4.82e-01 75.5% 93.8%
3474715 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 33.0 4.01e-01 100.0% 76.9%
4962256 101.1.2.937 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25943 0.64 45.0 4.41e-01 72.5% 80.9%
1759629 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.64 46.0 4.55e-01 88.2% 71.0%
3795121 4.1.1.110 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 0.61 33.0 3.95e-01 100.0% 80.0%
3604264 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 42.0 4.33e-01 72.5% 83.0%
3710007 4.1.1.372 ↗ beta barrels › SH3 › SH3 › SH3 › PF30207 0.61 42.0 3.95e-01 70.6% 99.2%
None — 0.58 45.0 3.04e-01 82.4% 64.1%
None — 0.57 44.0 3.08e-01 82.4% 73.3%
4023923 7577.1.1.3 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_5 0.56 44.0 3.09e-01 83.3% 83.4%
3279448 9.1.1.17 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF 0.54 41.0 3.82e-01 83.3% 85.0%
4530298 7577.1.1.3 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_5 0.53 46.0 3.09e-01 97.1% 69.4%
158943 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 32.0 3.58e-01 96.1% 79.7%
3929071 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 41.0 3.89e-01 85.3% 88.8%
3576128 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 41.0 3.98e-01 98.0% 74.8%
3598786 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.51 35.0 2.56e-01 70.6% 35.4%
3881117 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 41.0 4.23e-01 100.0% 87.0%
3520654 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.51 36.0 3.19e-01 73.5% 52.0%
D3 medium residues 10-88
PDB