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KY448244.1__AQT28798.1__YOLOSWAG_330__00330

Bact-Vir

KY448244.1__AQT28798.1__YOLOSWAG_330__00330

Identity

Accession:
KY448244 ↗
Kingdom:
phage

Quality

84.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yoloswagvirus› Erwinia_phage_vB_EamM_Yoloswag

TaxID: 1958956

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-106
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kfdA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.53 36.0 4.07e-01 95.6% 100.0%
4gniA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 34.0 3.51e-01 93.3% 70.9%
3ic9A02 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.50 29.0 3.21e-01 84.4% 71.4%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5064618 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.58 39.0 3.40e-01 92.2% 45.0%
3978383 1075.1.2.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.57 49.0 3.85e-01 93.3% 62.2%
3491114 101.1.10.6 ↗ alpha arrays › HTH › HTH › Cyclin-like › RB_A 0.56 42.0 3.20e-01 82.2% 67.2%
3705297 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.54 35.0 3.06e-01 84.4% 43.7%
4997475 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.52 39.0 2.89e-01 83.3% 53.9%
D2 medium residues 126-160
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3sykA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.72 53.0 3.96e-01 82.9% 62.2%
2lfhA00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.67 52.0 4.20e-01 85.7% 48.5%
3dr6B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.67 52.0 3.42e-01 94.3% 25.4%
4g9pA01 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.63 50.0 3.00e-01 94.3% 12.2%
2aswA00 1.10.8.500 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HAMP domain in histidine kinase 0.61 45.0 3.94e-01 82.9% 82.1%
4iejA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 50.0 4.06e-01 100.0% 49.3%
1pm6A00 1.10.1660.20 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Excisionase (Xis) protein 0.60 44.0 3.65e-01 85.7% 66.7%
1kyoF00 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.57 40.0 3.26e-01 77.1% 90.5%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4627782 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 51.0 3.96e-01 85.7% 35.3%
4287688 101.1.2.46 ↗ alpha arrays › HTH › HTH › winged helix domain › HrcA_DNA-bdg 0.67 50.0 3.81e-01 85.7% 31.6%
4996085 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.62 50.0 3.75e-01 97.1% 37.0%
4964920 101.1.2.944 ↗ alpha arrays › HTH › HTH › winged helix domain › PF26486 0.61 45.0 4.01e-01 94.3% 53.3%
4263826 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.61 50.0 4.11e-01 97.1% 77.1%
3627264 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 48.0 3.00e-01 97.1% 38.6%