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KY448244.1__AQT28814.1__YOLOSWAG_46__00046

Bact-Vir

KY448244.1__AQT28814.1__YOLOSWAG_46__00046

Identity

Accession:
KY448244 ↗
Kingdom:
phage

Quality

67.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yoloswagvirus› Erwinia_phage_vB_EamM_Yoloswag

TaxID: 1958956

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-62
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1n5uA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.82 67.0 5.41e-01 92.7% 47.6%
1kxpD03 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.79 66.0 5.60e-01 92.7% 56.8%
1hk3A03 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.77 65.0 5.44e-01 98.2% 55.4%
1icrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.77 59.0 3.93e-01 85.5% 21.3%
1nrwA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.76 55.0 4.12e-01 78.2% 32.3%
1j78A05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.76 64.0 6.27e-01 94.5% 90.0%
1kxpD01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.74 66.0 5.65e-01 100.0% 67.4%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.74 55.0 4.95e-01 80.0% 61.3%
1wgfA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.73 48.0 4.91e-01 72.7% 71.7%
1b8bA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.70 60.0 3.42e-01 94.5% 22.5%
2w43A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.70 50.0 4.99e-01 85.5% 73.7%
4uqfG01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.70 51.0 5.29e-01 80.0% 88.5%
6jrpA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.69 47.0 4.55e-01 74.5% 63.9%
1a8rA01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.68 54.0 4.68e-01 87.3% 68.2%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.68 52.0 4.73e-01 94.5% 62.7%
3nufB00 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.65 49.0 4.05e-01 96.4% 42.9%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.64 56.0 5.36e-01 96.4% 87.5%
5mmiJ02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.64 46.0 4.27e-01 74.5% 82.6%
2lciA00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 50.0 3.85e-01 92.7% 99.3%
2kvsA00 1.10.150.260 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › YozE SAM-like 0.61 43.0 3.82e-01 89.1% 51.2%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 3.22e-01 72.7% 72.1%
3k1rA01 1.20.1160.20 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › 0.60 43.0 3.77e-01 98.2% 50.6%
2fiyA00 3.90.1670.10 Alpha Beta › Alpha-Beta Complex › FdhE-like fold › FdhE-like domain 0.60 51.0 3.29e-01 100.0% 80.7%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.60 46.0 4.34e-01 83.6% 71.6%
1go3F02 6.10.140.10 Special › Helix non-globular › Helix Hairpins › 0.59 37.0 3.97e-01 72.7% 74.5%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 45.0 4.17e-01 83.6% 70.4%
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.59 44.0 3.19e-01 87.3% 26.7%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 48.0 4.75e-01 89.1% 87.9%
1hdlA00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.56 38.0 3.84e-01 85.5% 70.9%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.56 41.0 3.44e-01 80.0% 83.8%
3a98A02 1.20.1270.350 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain 0.55 46.0 4.02e-01 96.4% 64.4%
2qgsB01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.54 45.0 3.91e-01 98.2% 60.2%
1vt0k00 1.10.3230.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4) 0.53 41.0 3.03e-01 83.6% 53.8%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4375489 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.84 66.0 4.96e-01 83.6% 62.4%
2075033 3787.1.1.0 ↗ alpha bundles › HAD superfamily helical bundle insertion domain 0.84 58.0 5.08e-01 72.7% 55.7%
4015292 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.83 58.0 5.05e-01 72.7% 50.0%
5070097 4070.1.1.2 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.83 67.0 4.26e-01 87.3% 84.8%
4021888 2004.1.1.499 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD_2, Helicase_C_2 0.83 76.0 4.23e-01 100.0% 51.7%
4190023 7023.1.1.0 ↗ alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein 0.82 73.0 5.63e-01 96.4% 48.7%
3826683 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.80 71.0 4.35e-01 98.2% 31.5%
3503648 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.79 53.0 5.21e-01 74.5% 65.0%
3163911 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.78 59.0 4.46e-01 81.8% 57.7%
3625189 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.78 68.0 4.19e-01 96.4% 31.4%
3456717 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.78 55.0 5.27e-01 81.8% 64.6%
3963381 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.77 59.0 4.57e-01 83.6% 65.0%
3579091 103.15.1.1 ↗ alpha arrays › RuvA-C › Mitoribosomal protein mS23 › Mitoribosomal protein mS23 › MRP-S23 0.77 60.0 4.52e-01 85.5% 36.6%
3809576 103.4.1.5 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.76 61.0 5.74e-01 85.5% 83.1%
3492824 103.15.1.1 ↗ alpha arrays › RuvA-C › Mitoribosomal protein mS23 › Mitoribosomal protein mS23 › MRP-S23 0.76 54.0 4.08e-01 74.5% 33.6%
4027661 592.1.1.1 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.75 60.0 4.53e-01 85.5% 56.7%
3715528 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.74 64.0 5.14e-01 96.4% 63.8%
5040357 5065.1.1.3 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.74 57.0 3.55e-01 85.5% 96.4%
3426642 375.1.1.96 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › YABBY 0.73 53.0 5.51e-01 76.4% 84.0%
3673805 148.1.3.285 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Cyclin_C 0.73 64.0 5.50e-01 96.4% 71.8%
4929712 140.1.1.11 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.72 62.0 4.18e-01 100.0% 93.2%
3326759 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.71 52.0 4.80e-01 85.5% 60.0%
3788523 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.70 58.0 3.60e-01 92.7% 23.0%
2474880 397.7.1.0 ↗ few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 0.68 51.0 5.37e-01 81.8% 93.9%
3643664 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.68 55.0 4.91e-01 87.3% 64.0%
3376560 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 59.0 4.61e-01 100.0% 76.4%
4959934 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.64 46.0 4.15e-01 83.6% 56.0%
3970007 3502.1.1.0 ↗ alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein 0.63 55.0 4.92e-01 96.4% 72.0%
3284524 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.62 53.0 4.28e-01 100.0% 65.2%
3724838 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.62 45.0 4.20e-01 81.8% 61.4%
3267322 2004.5.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN,dDENN 0.59 50.0 3.32e-01 98.2% 41.3%
3507860 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 42.0 3.54e-01 80.0% 67.6%
393778 192.18.1.1 ↗ alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like › T3SS_needle_F 0.55 44.0 4.28e-01 89.1% 79.4%