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KY464836.1__AQT27772.1__X__00010

Bact-Vir

KY464836.1__AQT27772.1__X__00010

Identity

Accession:
KY464836 ↗
Kingdom:
phage

Quality

79.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autonotataviridae› Ampunavirus› Ralstonia_phage_RS-PI-1

TaxID: 1958965

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-130
PDB
Domain cluster: rep: NC_027397.1__YP_009153046.1__ACQ41_gp20__00020__D9-117
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03906.21 best Phage_T7_tail 39.4 8.10e-10 100.0% 78.4%
D2 high residues 524-607
PDB
Domain cluster: rep: MW073017.1__QPB08539.1__X__00060__D1038-1127
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13884.12 best Peptidase_S74 34.0 4.10e-08 50.0% 74.1%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2felA00 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.61 49.0 3.27e-01 88.1% 71.5%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 46.0 4.31e-01 95.2% 94.2%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 47.0 4.02e-01 100.0% 66.0%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 46.0 4.28e-01 98.8% 91.5%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 46.0 3.97e-01 100.0% 68.6%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 46.0 4.37e-01 100.0% 89.0%
3qw4B02 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 40.0 3.21e-01 88.1% 88.5%
4uy8X00 2.30.170.40 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 0.51 28.0 2.88e-01 96.4% 50.6%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 46.0 3.87e-01 100.0% 65.0%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.39e-01 81.0% 87.4%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 44.0 4.12e-01 98.8% 94.2%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3944436 3240.1.1.1 ↗ alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.81 75.0 6.82e-01 100.0% 77.3%
3225281 3240.1.1.2 ↗ alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74,MYRF_ICA 0.81 76.0 6.13e-01 100.0% 58.7%
3805761 614.1.1.0 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain 0.65 44.0 4.69e-01 98.8% 78.7%
1766108 223.3.1.3 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.65 24.0 2.70e-01 85.7% 40.0%
3964741 101.1.2.368 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_36 0.55 48.0 4.51e-01 95.2% 95.0%
3836863 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.55 42.0 3.49e-01 82.1% 66.0%
4929882 327.11.2.82 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF27275 0.53 36.0 4.02e-01 96.4% 89.2%
4960288 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 44.0 3.58e-01 96.4% 73.1%
3691615 5050.1.1.1 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.52 46.0 2.88e-01 98.8% 43.1%
5064508 101.1.2.275 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF1495 0.51 40.0 3.84e-01 86.9% 100.0%
3476114 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.51 40.0 2.65e-01 88.1% 90.9%
5058465 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.51 41.0 3.57e-01 86.9% 80.0%
4138755 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.51 45.0 3.89e-01 100.0% 68.9%
3744804 375.10.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DNA_Pol 0.51 34.0 3.69e-01 94.0% 82.9%
4122043 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.51 40.0 3.61e-01 86.9% 86.7%
3280001 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.50 44.0 3.66e-01 100.0% 58.7%
D3 medium residues 131-181
PDB
Domain cluster: representative
D4 medium residues 182-275
PDB
Domain cluster: representative
D5 medium residues 340-402
PDB
Domain cluster: rep: LC121084.1__BAU40036.1__X__00078__D519-579