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KY472224.1__AQT27695.1__EFP10_60__00060

Bact-Vir

KY472224.1__AQT27695.1__EFP10_60__00060

Identity

Accession:
KY472224 ↗
Kingdom:
phage

Quality

83.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Saphexavirus› Enterococcus_phage_EF-P10

TaxID: 1958912

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-137
PDB
Domain cluster: rep: MF001361.1__ASZ77376.1__X__00001__D369-485
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05257.23 best CHAP 39.2 1.10e-09 77.6% 81.5%
D2 high residues 169-232
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jwkA00 3.30.420.270 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.71 52.0 5.01e-01 82.8% 68.9%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.66 53.0 4.34e-01 87.5% 97.5%
2a6aB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 55.0 4.58e-01 100.0% 90.8%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 44.0 3.77e-01 73.4% 73.8%
6zwwC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 43.0 3.17e-01 71.9% 82.1%
2xrfC00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.61 53.0 3.49e-01 100.0% 86.4%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 51.0 4.66e-01 100.0% 90.1%
5umbA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 52.0 3.83e-01 98.4% 100.0%
3weeB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 52.0 3.91e-01 100.0% 86.5%
8g3hA01 3.20.20.330 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Homocysteine-binding-like domain 0.59 41.0 2.68e-01 73.4% 88.7%
3v4rA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 40.0 2.75e-01 73.4% 80.5%
3vpzA02 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.57 43.0 3.08e-01 82.8% 67.5%
6ovpA00 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.57 50.0 4.13e-01 100.0% 66.9%
4ebgA00 3.10.450.560 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 3.67e-01 79.7% 52.6%
1q5qH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 45.0 3.28e-01 100.0% 79.0%
8fwpB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 45.0 3.19e-01 100.0% 91.1%
3p1mA00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.51 40.0 3.22e-01 84.4% 81.7%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 36.0 3.66e-01 79.7% 90.9%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.50 35.0 3.68e-01 75.0% 91.7%
8eilD01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.50 43.0 3.24e-01 98.4% 98.2%
1krhA01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.50 40.0 3.35e-01 84.4% 91.3%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
184694 2484.6.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR 0.71 52.0 5.01e-01 82.8% 68.9%
3720049 2484.1.1.191 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RHSP 0.69 50.0 4.22e-01 79.7% 44.5%
3286068 3708.1.1.1 ↗ a+b three layers › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › T7SS_ESX1_EccB 0.67 52.0 4.68e-01 90.6% 61.1%
3700507 2004.1.1.427 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N 0.66 48.0 3.02e-01 79.7% 14.6%
2755269 3708.1.1.1 ↗ a+b three layers › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › T7SS_ESX1_EccB 0.66 51.0 4.64e-01 92.2% 61.4%
4971800 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.66 55.0 3.51e-01 100.0% 18.8%
3997784 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 52.0 4.01e-01 92.2% 38.0%
4929295 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 54.0 4.28e-01 100.0% 80.7%
3404463 2011.2.1.1 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.62 54.0 3.49e-01 100.0% 82.3%
4049940 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.60 49.0 3.95e-01 92.2% 95.4%
5001496 2484.3.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain 0.60 51.0 3.93e-01 98.4% 86.0%
3967664 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 46.0 4.19e-01 89.1% 80.0%
3217638 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 51.0 4.92e-01 100.0% 97.3%
3931048 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 52.0 3.47e-01 100.0% 37.7%
1693005 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 49.0 4.44e-01 96.9% 87.6%
3264176 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.58 45.0 3.64e-01 84.4% 73.6%
3245418 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 44.0 3.78e-01 92.2% 50.0%
3205569 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.58 39.0 2.86e-01 71.9% 82.5%
3236723 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.57 50.0 3.44e-01 100.0% 44.3%
3518153 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.56 40.0 3.42e-01 76.6% 70.9%
4955882 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.56 44.0 3.59e-01 87.5% 87.7%
3221928 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.56 47.0 3.18e-01 100.0% 44.7%
5012106 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.56 39.0 3.14e-01 75.0% 74.8%
3922649 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.55 40.0 3.98e-01 78.1% 73.8%
4944977 301.13.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain 0.55 45.0 3.69e-01 95.3% 95.4%
3491645 7515.1.1.1 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Alk_phosphatase 0.54 43.0 2.87e-01 92.2% 47.9%
4568757 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.54 41.0 4.18e-01 84.4% 98.3%
4135088 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.53 38.0 2.98e-01 75.0% 70.0%
4971881 268.1.1.1 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 0.53 47.0 3.96e-01 98.4% 69.4%
3526031 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 38.0 3.30e-01 79.7% 90.0%
3447738 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.52 39.0 3.47e-01 85.9% 61.5%
4977799 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.52 44.0 2.77e-01 100.0% 78.8%
3957263 268.1.1.0 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.51 43.0 3.69e-01 98.4% 72.5%
5074230 268.1.1.1 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 0.51 44.0 3.80e-01 98.4% 71.4%
5050699 268.1.1.0 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.51 44.0 3.67e-01 98.4% 67.8%
4972687 268.1.1.1 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 0.51 43.0 3.69e-01 98.4% 68.2%
5075966 2003.1.2.300 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat 0.51 42.0 2.67e-01 100.0% 75.4%
5081617 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 37.0 2.43e-01 84.4% 93.5%