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KY499642.1__AQT27971.1__pVa21_029__00029

Bact-Vir

KY499642.1__AQT27971.1__pVa21_029__00029

Identity

Accession:
KY499642 ↗
Kingdom:
phage

Quality

88.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_pVa-21

TaxID: 1958921

Cluster

View cluster (47 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-73
PDB
Domain cluster: rep: LC765218.1__BEG72430.1__RVBP21_0580__00058__D8-75
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1oygA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.68 55.0 3.35e-01 100.0% 13.1%
6ro0D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 50.0 4.18e-01 84.1% 46.4%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.66 44.0 4.41e-01 71.4% 68.3%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 47.0 4.01e-01 82.5% 49.0%
4l3aA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 51.0 4.77e-01 100.0% 71.2%
1ksiA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 53.0 4.74e-01 100.0% 72.9%
1g19A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 51.0 3.62e-01 100.0% 79.5%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.61 49.0 4.51e-01 88.9% 97.6%
1ne3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 40.0 3.97e-01 74.6% 63.2%
1s0wC01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.60 47.0 4.23e-01 87.3% 64.8%
5hv6A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.60 41.0 3.25e-01 71.4% 36.4%
4kt3B00 3.10.450.170 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › type vi secretion system effector-immunity co pseudomonas protegens 0.60 50.0 4.12e-01 100.0% 50.8%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 45.0 3.84e-01 84.1% 50.0%
4n4rB00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.58 49.0 3.86e-01 100.0% 68.2%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 41.0 3.91e-01 100.0% 61.7%
5hp6A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 49.0 3.15e-01 100.0% 22.4%
6ro0F00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 43.0 3.74e-01 84.1% 52.0%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.57 49.0 4.06e-01 100.0% 78.0%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 41.0 3.63e-01 84.1% 50.0%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 49.0 3.94e-01 100.0% 77.7%
2w9hA00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.57 39.0 2.95e-01 71.4% 94.9%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.57 42.0 3.91e-01 100.0% 60.9%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 38.0 3.85e-01 73.0% 71.4%
8ew8A01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.56 49.0 3.34e-01 100.0% 75.4%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 49.0 3.77e-01 100.0% 79.1%
4e72A01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.56 46.0 3.87e-01 100.0% 85.5%
2c9kA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.55 46.0 3.37e-01 98.4% 95.4%
1nycA00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.55 45.0 3.90e-01 100.0% 55.0%
1x9yA01 3.10.500.10 Alpha Beta › Roll › prostaphopain b, domain 1 › Staphopain proregion domain 0.55 44.0 3.37e-01 100.0% 35.3%
6ovbA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.55 45.0 3.36e-01 98.4% 93.6%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.55 47.0 3.92e-01 100.0% 73.9%
1oh1A00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.55 46.0 3.95e-01 100.0% 58.7%
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 47.0 3.84e-01 100.0% 72.9%
4hadB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 43.0 3.09e-01 100.0% 28.2%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 47.0 3.89e-01 100.0% 79.2%
2bmoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 46.0 3.38e-01 100.0% 63.9%
2lmeA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.54 39.0 3.34e-01 77.8% 67.6%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 47.0 4.10e-01 100.0% 78.6%
1shxA00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.54 44.0 3.53e-01 95.2% 92.8%
3gm8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 3.99e-01 100.0% 78.1%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 46.0 3.89e-01 100.0% 83.5%
1w99A03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.53 43.0 3.26e-01 98.4% 94.4%
7sf2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 45.0 4.06e-01 100.0% 86.0%
4yokA01 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.52 45.0 3.99e-01 100.0% 83.0%
2r76A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.51 44.0 3.55e-01 100.0% 75.8%
3bt3A01 3.30.1900.10 Alpha Beta › 2-Layer Sandwich › glyoxalase-related enzyme like fold › glyoxalase-related enzyme like domain 0.51 39.0 3.80e-01 98.4% 73.6%
6mfaA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 4.12e-01 100.0% 93.7%
3s5tA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.51 43.0 3.33e-01 100.0% 67.3%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.50 44.0 3.16e-01 100.0% 39.3%
4ew6A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 40.0 3.02e-01 95.2% 65.1%
6xaxA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 44.0 4.00e-01 100.0% 87.1%
3uc2A00 2.60.40.3340 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 0.50 43.0 3.53e-01 100.0% 90.3%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.67 57.0 3.79e-01 100.0% 76.5%
3651043 243.3.1.47 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF7074 0.67 50.0 4.39e-01 100.0% 53.7%
3269706 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 46.0 4.30e-01 76.2% 57.5%
3483288 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 51.0 4.03e-01 100.0% 40.8%
3256042 2004.1.1.21 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA 0.66 56.0 3.69e-01 100.0% 77.6%
4995730 2004.1.1.21 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA 0.66 56.0 3.75e-01 100.0% 76.3%
3347329 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.65 42.0 3.68e-01 95.2% 42.0%
4636302 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 46.0 3.83e-01 76.2% 81.7%
3659314 2003.1.2.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.65 56.0 3.53e-01 100.0% 44.2%
3694763 375.1.1.222 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF29994 0.65 49.0 3.96e-01 100.0% 40.8%
3518490 2.1.1.110 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › BRCA2DBD_OB2 0.64 43.0 3.61e-01 82.5% 39.1%
4308581 220.1.1.168 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 0.63 53.0 4.38e-01 96.8% 65.8%
3309559 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.62 40.0 2.65e-01 100.0% 15.2%
5000455 523.1.1.3 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › PF29994 0.62 53.0 4.29e-01 100.0% 48.8%
3383095 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.62 52.0 3.52e-01 100.0% 33.6%
3613616 5.1.4.39 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 0.62 54.0 3.27e-01 100.0% 18.2%
4028764 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 46.0 4.03e-01 100.0% 53.1%
3487242 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 39.0 4.00e-01 79.4% 66.7%
4952059 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.61 48.0 4.50e-01 98.4% 70.0%
3990761 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 48.0 4.26e-01 88.9% 91.6%
3933168 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 52.0 3.83e-01 100.0% 38.9%
3210879 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.60 44.0 4.84e-01 79.4% 98.0%
4930531 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 53.0 4.49e-01 100.0% 85.7%
3274309 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.60 53.0 3.10e-01 100.0% 51.9%
3670792 243.3.1.67 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Phytochelatin_C 0.60 48.0 4.80e-01 100.0% 93.8%
5000763 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 43.0 3.89e-01 77.8% 81.1%
5080441 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.60 41.0 3.28e-01 82.5% 34.6%
4930846 2.1.1.12 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.60 39.0 3.98e-01 77.8% 70.0%
5055184 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 44.0 4.10e-01 100.0% 61.2%
5032255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.57e-01 100.0% 77.1%
2137686 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.59 52.0 4.09e-01 100.0% 83.6%
3272782 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.59 42.0 4.63e-01 81.0% 95.9%
3255471 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 49.0 4.63e-01 100.0% 76.0%
5037223 2.1.1.12 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.59 38.0 3.93e-01 77.8% 68.3%
3782292 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.59 48.0 4.50e-01 100.0% 72.5%
3838060 7503.1.1.4 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.59 51.0 3.82e-01 100.0% 58.8%
3955407 243.1.1.69 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF6459 0.59 51.0 4.21e-01 100.0% 83.9%
3676791 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 43.0 4.13e-01 84.1% 66.7%
3249485 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 52.0 4.13e-01 100.0% 57.6%
5018520 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 49.0 4.35e-01 100.0% 64.3%
2541776 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.58 43.0 3.65e-01 84.1% 46.8%
4938589 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 42.0 3.34e-01 79.4% 43.7%
3599617 129.1.1.0 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like 0.57 47.0 3.02e-01 95.2% 30.1%
3813764 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.57 46.0 3.68e-01 95.2% 71.4%
3679001 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.56 43.0 3.16e-01 84.1% 62.6%
3695897 109.4.1.681 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.56 46.0 2.81e-01 98.4% 23.9%
3289386 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 42.0 3.85e-01 85.7% 61.4%
3649429 220.1.1.187 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C 0.55 44.0 3.43e-01 96.8% 57.1%
4450485 2004.1.1.21 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA 0.55 47.0 3.47e-01 96.8% 71.2%
5075874 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.55 47.0 3.55e-01 100.0% 38.8%
3604573 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.55 44.0 2.53e-01 100.0% 8.7%
3691389 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.54 44.0 3.07e-01 93.7% 30.6%
3926984 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 37.0 2.69e-01 73.0% 22.5%
3856870 708.1.1.9 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › CG-1 0.54 46.0 3.70e-01 95.2% 92.7%
4942841 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 46.0 3.89e-01 100.0% 60.9%
3255575 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 46.0 2.98e-01 100.0% 21.6%
4028577 212.1.1.1 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.54 45.0 3.56e-01 98.4% 60.0%
3319850 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 44.0 2.84e-01 100.0% 19.5%
3897566 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 47.0 4.24e-01 98.4% 82.4%
4025315 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.53 45.0 3.82e-01 100.0% 62.7%
3943050 274.1.1.51 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › PF27121 0.52 42.0 3.17e-01 93.7% 75.4%
3473974 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.52 34.0 2.73e-01 77.8% 29.0%
3248985 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 40.0 3.21e-01 96.8% 42.3%
4451022 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 41.0 3.48e-01 98.4% 66.7%
3929341 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.50 41.0 3.83e-01 100.0% 73.8%
D2 high residues 76-158
PDB
Domain cluster: rep: LC667451.1__BDD79839.1__X__00320__D73-157
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.66 34.0 3.88e-01 85.5% 67.2%
3u97A00 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.65 38.0 3.95e-01 96.4% 62.3%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.63 34.0 3.10e-01 74.7% 38.9%
1j0wB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 48.0 4.53e-01 95.2% 68.9%
3ml4A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 46.0 4.38e-01 94.0% 68.0%
1qqgA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 48.0 4.53e-01 95.2% 70.2%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 44.0 3.71e-01 78.3% 80.3%
2hjjA00 3.30.160.130 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains 0.59 34.0 3.72e-01 80.7% 69.7%
5swiD01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.58 41.0 2.95e-01 73.5% 77.9%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 43.0 4.36e-01 79.5% 78.3%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.58 43.0 3.73e-01 79.5% 76.0%
2kuqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.62e-01 90.4% 45.1%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.56 39.0 2.65e-01 73.5% 24.5%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 41.0 3.71e-01 80.7% 73.9%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.55 41.0 3.04e-01 78.3% 31.5%
1vr5A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 37.0 3.04e-01 92.8% 38.8%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 4.11e-01 78.3% 89.4%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 42.0 3.02e-01 81.9% 39.8%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.55 41.0 3.67e-01 81.9% 80.6%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 36.0 4.04e-01 78.3% 90.5%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.54 37.0 3.72e-01 89.2% 67.4%
3v8uA04 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.54 40.0 3.42e-01 79.5% 81.6%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 47.0 3.83e-01 98.8% 96.4%
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 31.0 3.56e-01 90.4% 79.3%
4mveA00 2.40.128.580 Mainly Beta › Beta Barrel › Lipocalin › GXWXG domain 0.54 46.0 3.86e-01 96.4% 70.7%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 38.0 2.71e-01 75.9% 31.3%
3s6pA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.53 41.0 3.49e-01 83.1% 85.2%
3ewaA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 46.0 3.31e-01 97.6% 90.8%
2r55A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 44.0 3.44e-01 98.8% 80.3%
3ir3A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 38.0 3.32e-01 75.9% 97.6%
2dslA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 36.0 3.24e-01 72.3% 87.8%
1w4bA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 43.0 3.23e-01 96.4% 74.3%
5cyxA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 42.0 4.24e-01 88.0% 100.0%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.51 38.0 3.64e-01 92.8% 66.7%
2rovA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.76e-01 90.4% 79.5%
4xq7A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 43.0 3.61e-01 97.6% 80.1%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.50 38.0 3.49e-01 81.9% 75.2%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4197431 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 59.0 6.22e-01 84.3% 100.0%
4940436 3414.1.1.0 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.64 52.0 5.05e-01 85.5% 87.8%
3583242 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 48.0 4.80e-01 95.2% 87.1%
3937835 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.59 44.0 3.97e-01 90.4% 55.8%
3290683 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.59 43.0 3.81e-01 78.3% 79.7%
3990213 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.59 44.0 4.21e-01 90.4% 67.0%
3476018 220.1.1.155 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26658 0.58 45.0 3.97e-01 90.4% 56.1%
3475799 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.58 46.0 4.03e-01 90.4% 56.8%
3896484 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.58 46.0 4.13e-01 90.4% 60.8%
3979564 4246.1.1.0 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit 0.58 31.0 3.46e-01 85.5% 66.2%
4006488 4959.1.1.0 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit 0.58 31.0 3.46e-01 85.5% 66.2%
4965852 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.58 35.0 3.58e-01 85.5% 61.3%
5041149 4.26.1.9 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › CPxCG_zf 0.57 31.0 3.98e-01 94.0% 97.8%
3929875 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.57 38.0 3.71e-01 96.4% 61.3%
3285986 7523.1.1.3 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 0.57 44.0 3.61e-01 83.1% 56.5%
3982411 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.57 31.0 3.45e-01 85.5% 67.7%
4870150 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.55 42.0 3.63e-01 81.9% 74.6%
3490544 5.1.4.147 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.55 39.0 2.57e-01 74.7% 24.6%
4242808 101.1.8.6 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › ResT-TelK_cat 0.55 41.0 3.62e-01 78.3% 58.3%
5000383 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.55 46.0 3.39e-01 94.0% 97.8%
3586554 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 47.0 4.28e-01 94.0% 73.6%
5005811 3414.1.1.0 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.54 41.0 4.23e-01 83.1% 97.5%
5061515 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 4.30e-01 95.2% 79.0%
3714545 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 40.0 2.62e-01 79.5% 20.1%
135359 220.1.1.17 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_1 0.54 41.0 3.60e-01 81.9% 57.6%
3935357 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 3.64e-01 84.3% 57.5%
3247033 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 39.0 3.21e-01 78.3% 86.9%
2653812 6107.1.1.2 ↗ a+b two layers › a+b domain in platelet binding protein GspB › a+b domain in platelet binding protein GspB › a+b domain in platelet binding protein GspB › aRib 0.53 45.0 4.46e-01 97.6% 93.2%
3939096 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.53 42.0 4.36e-01 97.6% 97.3%
2755517 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 31.0 3.14e-01 85.5% 56.8%
3164889 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.52 44.0 3.73e-01 95.2% 57.6%
3166076 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.52 40.0 2.82e-01 84.3% 71.1%
3302833 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 45.0 3.14e-01 98.8% 69.8%
3949015 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.52 43.0 3.64e-01 94.0% 62.0%
5024609 7523.1.1.3 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 0.52 44.0 3.45e-01 96.4% 53.0%
4250106 101.1.2.274 ↗ alpha arrays › HTH › HTH › winged helix domain › SgrR_N 0.51 43.0 3.11e-01 95.2% 40.0%
3698212 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 42.0 2.80e-01 90.4% 55.8%
3920611 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 35.0 2.24e-01 71.1% 18.4%