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KY499642.1__AQT27988.1__pVa21_046__00046
Bact-VirKY499642.1__AQT27988.1__pVa21_046__00046
Identity
- Accession:
- KY499642 ↗
- Kingdom:
- phage
Quality
55.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-70
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4b08A01 | 2.40.50.730 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.74 | 46.0 | 4.13e-01 | 76.7% | 46.9% |
| 6fexA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.70 | 51.0 | 4.35e-01 | 78.3% | 51.5% |
| 2hw6A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.70 | 44.0 | 3.90e-01 | 75.0% | 44.3% |
| 1ztxE00 | 2.60.40.350 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.68 | 48.0 | 4.07e-01 | 75.0% | 72.3% |
| 2gpjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.67 | 46.0 | 3.91e-01 | 71.7% | 69.0% |
| 3q39B02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.67 | 48.0 | 3.96e-01 | 76.7% | 82.7% |
| 6k2lA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.64 | 45.0 | 3.72e-01 | 75.0% | 73.0% |
| 2eixA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.63 | 44.0 | 3.73e-01 | 75.0% | 68.9% |
| 1cqxA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.63 | 44.0 | 3.60e-01 | 73.3% | 64.9% |
| 4wqmA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.62 | 43.0 | 3.76e-01 | 75.0% | 66.3% |
| 1uswA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.62 | 43.0 | 2.84e-01 | 95.0% | 16.9% |
| 1svbA04 | 2.60.40.350 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 44.0 | 3.81e-01 | 76.7% | 74.0% |
| 3djmA00 | 2.170.150.40 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Domain of unknown function (DUF427) | 0.61 | 46.0 | 3.84e-01 | 83.3% | 55.4% |
| 3p8aA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.59 | 39.0 | 2.92e-01 | 98.3% | 25.6% |
| 3nqzA01 | 3.10.450.490 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 44.0 | 3.96e-01 | 95.0% | 56.0% |
| 1nw1A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.59 | 48.0 | 4.29e-01 | 100.0% | 64.6% |
| 3oxhA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.58 | 40.0 | 3.12e-01 | 95.0% | 31.4% |
| 2vsmA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.58 | 50.0 | 3.05e-01 | 100.0% | 27.1% |
| 5w3xD01 | 2.20.25.80 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain | 0.58 | 41.0 | 4.08e-01 | 83.3% | 70.8% |
| 3iuzA00 | 3.10.180.50 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › | 0.56 | 45.0 | 2.96e-01 | 98.3% | 78.1% |
| 3k8aB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 39.0 | 3.31e-01 | 75.0% | 50.5% |
| 2rbbA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.56 | 39.0 | 3.13e-01 | 95.0% | 34.9% |
| 1wnhA01 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 47.0 | 4.09e-01 | 100.0% | 68.0% |
| 3u4vA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 38.0 | 3.14e-01 | 78.3% | 37.9% |
| 3g7nB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 42.0 | 2.77e-01 | 90.0% | 19.5% |
| 5aj3Q00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 40.0 | 3.31e-01 | 83.3% | 43.1% |
| 3ff2A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 44.0 | 3.77e-01 | 100.0% | 80.3% |
| 4gzvA00 | 2.40.128.490 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 | 0.55 | 44.0 | 3.48e-01 | 95.0% | 63.3% |
| 2w7vA00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.54 | 47.0 | 4.30e-01 | 100.0% | 85.4% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 38.0 | 3.22e-01 | 80.0% | 48.2% |
| 3djwA00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 37.0 | 3.26e-01 | 91.7% | 47.4% |
| 5hl8C00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.52 | 45.0 | 4.16e-01 | 100.0% | 88.6% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.52 | 35.0 | 3.82e-01 | 70.0% | 95.8% |
| 1so7A00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.52 | 42.0 | 2.73e-01 | 100.0% | 21.6% |
| 3lvtA05 | 2.60.40.2220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 42.0 | 3.95e-01 | 95.0% | 100.0% |
| 3uueA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 41.0 | 2.67e-01 | 91.7% | 19.0% |
| 2rsxA00 | 3.10.450.420 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 41.0 | 3.21e-01 | 100.0% | 83.0% |
| 7wvzA03 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.51 | 40.0 | 2.80e-01 | 100.0% | 25.2% |
| 2lfuA02 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.50 | 42.0 | 3.39e-01 | 100.0% | 57.4% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3924154 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.70 | 49.0 | 2.99e-01 | 78.3% | 11.5% |
| 3927238 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.67 | 51.0 | 3.13e-01 | 83.3% | 15.2% |
| 3226366 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.66 | 48.0 | 2.93e-01 | 78.3% | 12.5% |
| 3583388 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.66 | 48.0 | 2.96e-01 | 78.3% | 13.4% |
| 3291549 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 44.0 | 3.75e-01 | 73.3% | 64.8% |
| 3721222 | 211.1.1.11 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_6 | 0.64 | 44.0 | 4.12e-01 | 93.3% | 57.3% |
| 3457651 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.63 | 47.0 | 3.00e-01 | 80.0% | 16.7% |
| 3851965 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.63 | 55.0 | 3.45e-01 | 100.0% | 18.5% |
| 4315975 | 243.3.1.68 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY, FTP | 0.63 | 47.0 | 3.42e-01 | 80.0% | 35.2% |
| 3178300 | 206.1.1.72 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal | 0.63 | 47.0 | 2.90e-01 | 100.0% | 13.7% |
| 3927079 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.63 | 46.0 | 2.92e-01 | 80.0% | 28.9% |
| 4163867 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.63 | 46.0 | 3.66e-01 | 88.3% | 38.2% |
| 4101633 | 243.3.1.5 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP | 0.63 | 53.0 | 4.41e-01 | 96.7% | 60.0% |
| 4479020 | 243.3.1.5 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP | 0.62 | 46.0 | 4.14e-01 | 80.0% | 68.2% |
| 4296288 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.62 | 45.0 | 3.80e-01 | 80.0% | 46.7% |
| 4272501 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.61 | 52.0 | 4.33e-01 | 95.0% | 61.0% |
| 4444078 | 243.3.1.5 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP | 0.61 | 52.0 | 4.24e-01 | 96.7% | 55.7% |
| 4629072 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.61 | 41.0 | 3.07e-01 | 70.0% | 28.7% |
| 4331578 | 243.3.1.5 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP | 0.60 | 52.0 | 4.41e-01 | 100.0% | 63.8% |
| 4382051 | 243.3.1.5 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP | 0.60 | 52.0 | 4.28e-01 | 100.0% | 55.7% |
| 3663455 | 5.1.3.68 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 | 0.59 | 46.0 | 3.03e-01 | 100.0% | 18.6% |
| 4202460 | 243.3.1.5 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP | 0.59 | 50.0 | 4.49e-01 | 100.0% | 71.1% |
| 3579710 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.59 | 52.0 | 4.35e-01 | 100.0% | 81.9% |
| 4339224 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.58 | 49.0 | 3.58e-01 | 100.0% | 69.7% |
| 3555522 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.58 | 46.0 | 3.51e-01 | 90.0% | 58.0% |
| 5016178 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 41.0 | 3.45e-01 | 80.0% | 43.8% |
| 3676745 | 2484.1.1.157 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 | 0.57 | 43.0 | 3.40e-01 | 85.0% | 40.0% |
| 3584922 | 5.1.4.39 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 | 0.57 | 48.0 | 3.28e-01 | 100.0% | 30.0% |
| 4027148 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.57 | 51.0 | 3.21e-01 | 100.0% | 20.7% |
| 4232684 | 243.3.1.5 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP | 0.57 | 46.0 | 3.71e-01 | 100.0% | 44.8% |
| None | — | 0.57 | 46.0 | 3.85e-01 | 100.0% | 50.9% | |
| 5033737 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.57 | 47.0 | 3.45e-01 | 100.0% | 77.1% |
| 3785641 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 37.0 | 3.44e-01 | 70.0% | 53.3% |
| 3302166 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.56 | 44.0 | 4.33e-01 | 100.0% | 81.5% |
| 3601659 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 44.0 | 3.48e-01 | 96.7% | 56.0% |
| 5077937 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.54 | 42.0 | 3.42e-01 | 90.0% | 63.1% |
| 4944536 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 43.0 | 4.23e-01 | 100.0% | 81.5% |
| 3181024 | 719.1.1.2 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF | 0.54 | 45.0 | 3.62e-01 | 98.3% | 96.2% |
| 3488451 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 46.0 | 2.82e-01 | 100.0% | 23.4% |
| 3573614 | 310.3.1.18 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PAP_PilO | 0.53 | 45.0 | 4.12e-01 | 100.0% | 82.4% |
| 3846130 | 4.1.1.311 ↗ | beta barrels › SH3 › SH3 › SH3 › BRWD_AD | 0.53 | 46.0 | 3.22e-01 | 100.0% | 45.4% |
| 3733745 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 44.0 | 3.19e-01 | 100.0% | 85.0% |
| 4028149 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.53 | 39.0 | 3.42e-01 | 95.0% | 50.5% |
| 3560129 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.53 | 46.0 | 3.67e-01 | 100.0% | 62.4% |
| 3492699 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.52 | 44.0 | 3.88e-01 | 100.0% | 73.7% |
| 4318553 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.51 | 44.0 | 2.90e-01 | 100.0% | 63.6% |
| 3500792 | 206.1.1.88 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL, DUF1679 | 0.51 | 42.0 | 2.65e-01 | 95.0% | 17.8% |
| 3513210 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 43.0 | 3.70e-01 | 100.0% | 73.3% |
| 5011678 | 7516.1.1.1 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase | 0.50 | 38.0 | 2.64e-01 | 88.3% | 36.1% |
| 3610755 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.50 | 35.0 | 2.90e-01 | 75.0% | 51.3% |
D2
high
residues 73-145
D3
medium
residues 171-273