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KY499642.1__AQT27997.1__pVa21_055__00055

Bact-Vir

KY499642.1__AQT27997.1__pVa21_055__00055

Identity

Accession:
KY499642 ↗
Kingdom:
phage

Quality

81.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_pVa-21

TaxID: 1958921

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-124
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.66 49.0 5.29e-01 87.0% 92.2%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 48.0 5.25e-01 82.6% 93.3%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 47.0 5.35e-01 87.0% 100.0%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.65 49.0 5.42e-01 79.3% 100.0%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.65 50.0 4.85e-01 83.7% 81.7%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.64 35.0 3.85e-01 75.0% 64.9%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 4.51e-01 84.8% 82.1%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.61 49.0 5.24e-01 89.1% 100.0%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 39.0 4.54e-01 81.5% 95.2%
3dlbB03 2.170.260.50 Mainly Beta › Beta Complex › paz domain › 0.60 44.0 4.52e-01 77.2% 100.0%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.59 38.0 3.57e-01 70.7% 53.6%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.58 38.0 3.37e-01 91.3% 44.5%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 43.0 4.16e-01 78.3% 76.0%
1l1dA00 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.57 45.0 3.94e-01 87.0% 78.5%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 42.0 4.66e-01 85.9% 100.0%
2yweA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 42.0 4.07e-01 80.4% 91.0%
1zunB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 41.0 4.20e-01 79.3% 95.6%
3p26B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 41.0 4.04e-01 80.4% 93.1%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.53 35.0 2.81e-01 75.0% 32.5%
3e1yE01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 40.0 4.11e-01 79.3% 97.7%
4g6iB01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.52 41.0 4.20e-01 84.8% 98.9%
3mcaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 41.0 3.75e-01 83.7% 96.6%
3lyxB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 35.0 3.24e-01 94.6% 54.2%
6dnzA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.51 36.0 2.95e-01 72.8% 95.5%
2bm0A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 39.0 3.77e-01 80.4% 84.5%
4ac9C04 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.51 40.0 4.23e-01 84.8% 95.0%
8b6zA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 38.0 3.98e-01 76.1% 100.0%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4321173 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.78 49.0 5.96e-01 81.5% 100.0%
5004050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 44.0 5.04e-01 78.3% 77.1%
4519674 4.1.1.186 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5397 0.75 47.0 5.68e-01 77.2% 100.0%
3783617 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.75 54.0 5.74e-01 73.9% 98.8%
3990857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 47.0 5.73e-01 78.3% 100.0%
4974669 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.74 46.0 4.66e-01 83.7% 63.3%
3219441 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.69 49.0 5.25e-01 73.9% 95.0%
3399965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 54.0 5.46e-01 100.0% 87.8%
3951961 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.66 53.0 5.27e-01 92.4% 82.1%
4946993 4.1.1.479 ↗ beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.66 48.0 5.39e-01 87.0% 100.0%
4335575 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 53.0 3.00e-01 88.0% 8.5%
4549698 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.66 47.0 4.67e-01 76.1% 71.6%
3935042 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.65 46.0 4.35e-01 72.8% 67.3%
4997059 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.65 50.0 5.43e-01 90.2% 100.0%
3483489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 47.0 5.13e-01 87.0% 93.3%
3470175 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.65 50.0 5.30e-01 81.5% 100.0%
3234035 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.64 51.0 4.66e-01 84.8% 84.2%
4965721 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 48.0 4.48e-01 79.3% 80.9%
1175108 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.64 50.0 4.69e-01 83.7% 71.4%
4013811 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.64 47.0 4.75e-01 77.2% 91.1%
3652661 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.63 48.0 4.30e-01 80.4% 92.3%
4954224 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.63 53.0 5.24e-01 90.2% 91.6%
4016437 4.1.1.85 ↗ beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.63 52.0 4.61e-01 92.4% 85.0%
3982999 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.63 51.0 4.96e-01 87.0% 89.0%
3185323 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.62 47.0 4.43e-01 89.1% 66.4%
3475919 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.62 54.0 3.64e-01 93.5% 37.2%
3593976 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.52e-01 93.5% 63.1%
3643549 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.62 44.0 4.71e-01 82.6% 87.5%
3835831 3174.1.1.1 ↗ beta barrels › Ribosomal protein L14-like › Ribosomal protein L14-related › Ribosomal protein L14-related › Ribosomal_L14 0.61 44.0 3.71e-01 75.0% 63.3%
3414877 4.27.1.1 ↗ beta barrels › SH3 › Mitoribosomal protein mS34 › Mitoribosomal protein mS34 › MRP-S34 0.60 53.0 4.49e-01 96.7% 64.0%
3360171 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.59 50.0 4.41e-01 93.5% 61.6%
4025294 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.59 49.0 4.94e-01 89.1% 90.0%
3742627 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.59 50.0 4.80e-01 91.3% 82.7%
577 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.59 50.0 4.16e-01 92.4% 70.6%
4029263 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.58 50.0 4.58e-01 94.6% 72.5%
4258307 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 43.0 3.03e-01 78.3% 32.1%
3636251 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.57 48.0 4.42e-01 91.3% 70.0%
3382832 4.1.1.302 ↗ beta barrels › SH3 › SH3 › SH3 › tSH3-B_UBE2O 0.57 50.0 3.93e-01 93.5% 83.9%
3239313 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.57 41.0 2.82e-01 75.0% 39.1%
3744711 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.56 39.0 3.22e-01 83.7% 39.3%
3198325 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 39.0 2.71e-01 73.9% 25.1%
4025536 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 43.0 4.22e-01 83.7% 89.0%
3927145 2007.2.3.21 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK 0.54 39.0 2.71e-01 73.9% 40.9%
3586434 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.54 38.0 3.20e-01 83.7% 42.5%
4016930 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.53 36.0 3.06e-01 81.5% 40.0%
3633062 206.1.1.34 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase_fungal 0.52 37.0 2.52e-01 75.0% 58.6%
3437773 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.52 36.0 3.38e-01 71.7% 67.0%
1108456 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.52 37.0 3.58e-01 85.9% 64.8%
4026033 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.51 40.0 3.78e-01 81.5% 96.4%
4962710 295.1.1.54 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF6360 0.51 35.0 3.65e-01 71.7% 89.4%
3229389 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.50 36.0 2.51e-01 76.1% 86.3%