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KY499642.1__AQT28049.1__pVa21_108__00108

Bact-Vir

KY499642.1__AQT28049.1__pVa21_108__00108

Identity

Accession:
KY499642 ↗
Kingdom:
phage

Quality

83.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_pVa-21

TaxID: 1958921

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-80
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7ox5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 36.0 3.34e-01 100.0% 39.8%
2l2oA00 1.10.10.1540 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain 0.67 48.0 4.73e-01 74.7% 88.2%
5v89A02 1.10.238.200 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Cullin, PONY binding domain 0.60 42.0 3.96e-01 74.7% 58.8%
3akaA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 47.0 3.83e-01 89.9% 98.1%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 44.0 3.69e-01 79.7% 94.8%
3iv6A02 1.10.150.330 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › zn-dependent alcohol dehydrogenase 0.58 44.0 4.69e-01 100.0% 98.5%
3hwcA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 43.0 3.28e-01 86.1% 87.6%
1obhA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 42.0 2.90e-01 82.3% 79.1%
1auvA01 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.53 29.0 3.27e-01 100.0% 68.3%
1c0aA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 42.0 2.84e-01 88.6% 67.0%
1dpjA02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.51 38.0 3.18e-01 83.5% 44.8%
3ix3A00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.51 39.0 3.19e-01 87.3% 63.8%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 41.0 4.09e-01 100.0% 86.6%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.50 39.0 4.12e-01 100.0% 94.2%
5ck3C00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 37.0 3.42e-01 79.7% 95.2%
2pjyC00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.50 30.0 3.05e-01 100.0% 58.2%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
143797 101.1.2.149 ↗ alpha arrays › HTH › HTH › winged helix domain › Costars 0.67 48.0 4.82e-01 74.7% 92.6%
4490196 108.1.1.207 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › PF30486 0.65 46.0 4.67e-01 75.9% 88.7%
4333574 101.1.2.142 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.61 44.0 4.25e-01 75.9% 78.9%
5049794 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.60 35.0 2.85e-01 100.0% 31.0%
3806332 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.59 43.0 4.31e-01 77.2% 85.0%
4151900 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.57 33.0 2.74e-01 100.0% 30.6%
3244009 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 40.0 3.43e-01 75.9% 87.4%
3642777 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 41.0 3.57e-01 78.5% 53.6%
3583059 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 33.0 2.70e-01 100.0% 31.0%
4995595 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.55 47.0 3.31e-01 94.9% 40.3%
4943252 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.55 32.0 2.71e-01 100.0% 30.3%
4680353 321.1.1.3 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › ATP-gua_Ptrans 0.54 40.0 2.83e-01 78.5% 87.9%
3925968 109.4.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 0.54 43.0 2.37e-01 89.9% 10.7%
3607082 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 45.0 4.35e-01 100.0% 83.3%
3201554 150.1.1.98 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Vwaint 0.54 37.0 3.38e-01 74.7% 75.8%
None — 0.54 40.0 2.78e-01 83.5% 92.1%
3623646 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 39.0 3.77e-01 78.5% 88.9%
5012700 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.53 39.0 3.88e-01 79.7% 84.7%
3406058 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.52 40.0 2.82e-01 87.3% 95.3%
3942062 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 39.0 3.30e-01 84.8% 76.7%
164902 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.52 40.0 3.15e-01 86.1% 99.4%
3974768 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 39.0 3.26e-01 86.1% 78.1%