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KY549443.1__APZ81962.1__EFP01_035__00035
Bact-VirKY549443.1__APZ81962.1__EFP01_035__00035
Identity
- Accession:
- KY549443 ↗
- Kingdom:
- phage
Quality
88.2
mean pLDDT
Taxonomy
TaxID: 1926594
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-196
Domain cluster:
rep: KP687431.1__AKC02295.1__X__00088__D13-253
D2
high
residues 198-223_277-373
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6vddA02 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.86 | 73.0 | 7.62e-01 | 100.0% | 94.8% |
| 1bdp002 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.84 | 68.0 | 7.28e-01 | 100.0% | 95.4% |
| 3onjA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.83 | 42.0 | 4.69e-01 | 97.6% | 62.9% |
| 7r0kA01 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.78 | 63.0 | 6.71e-01 | 82.9% | 100.0% |
| 1t7pA02 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.74 | 68.0 | 6.22e-01 | 97.6% | 99.4% |
| 4rngC00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.72 | 34.0 | 4.01e-01 | 97.6% | 63.9% |
| 3lbxB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 37.0 | 4.00e-01 | 97.6% | 57.9% |
| 1u5pA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 38.0 | 4.04e-01 | 98.4% | 58.3% |
| 2xq9A02 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.70 | 41.0 | 4.21e-01 | 99.2% | 59.5% |
| 1nafA02 | 1.20.58.160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 34.0 | 3.99e-01 | 95.1% | 68.2% |
| 4oe8C00 | 1.10.8.1170 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.66 | 34.0 | 3.97e-01 | 96.7% | 69.0% |
| 2yinA03 | 1.20.58.740 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C | 0.65 | 35.0 | 3.45e-01 | 97.6% | 50.0% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.64 | 37.0 | 4.69e-01 | 92.7% | 98.6% |
| 2vs0A00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.64 | 41.0 | 4.97e-01 | 95.1% | 97.6% |
| 1oahA02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.63 | 36.0 | 3.42e-01 | 94.3% | 46.5% |
| 2odvA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 37.0 | 3.91e-01 | 97.6% | 64.3% |
| 3edvB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 38.0 | 3.65e-01 | 95.9% | 55.1% |
| 4i0xH00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.61 | 38.0 | 4.64e-01 | 94.3% | 100.0% |
| 1wleA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.61 | 42.0 | 4.38e-01 | 95.9% | 75.4% |
| 3ezuA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.58 | 30.0 | 2.64e-01 | 95.1% | 31.9% |
| 1hy5B00 | 1.20.120.260 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain | 0.55 | 31.0 | 3.21e-01 | 100.0% | 56.2% |
| 3p0uA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.54 | 39.0 | 3.23e-01 | 76.4% | 73.4% |
| 2qwoB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.52 | 36.0 | 4.07e-01 | 72.4% | 94.6% |
| 3ukmA01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 43.0 | 3.42e-01 | 91.9% | 60.7% |
| 3fayA00 | 1.10.506.10 | Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 | 0.50 | 36.0 | 2.59e-01 | 74.8% | 100.0% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3163747 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.88 | 76.0 | 4.86e-01 | 100.0% | 22.4% |
| 4061480 | 2484.1.1.58 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Taq-exonuc | 0.87 | 76.0 | 5.30e-01 | 100.0% | 33.6% |
| 4339694 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.86 | 74.0 | 4.77e-01 | 100.0% | 23.4% |
| 57665 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.86 | 75.0 | 6.47e-01 | 100.0% | 62.4% |
| 1391185 | 4970.1.1.2 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A | 0.86 | 74.0 | 6.26e-01 | 100.0% | 58.9% |
| 4072515 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.86 | 75.0 | 4.95e-01 | 100.0% | 26.4% |
| 4319500 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.86 | 75.0 | 4.80e-01 | 100.0% | 23.1% |
| 3505184 | 4970.1.1.2 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A | 0.79 | 71.0 | 5.53e-01 | 100.0% | 47.8% |
| 3964115 | 4970.1.1.2 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A | 0.79 | 75.0 | 7.38e-01 | 99.2% | 95.4% |
| 3705119 | 4970.1.1.2 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A | 0.78 | 75.0 | 6.11e-01 | 100.0% | 73.7% |
| 4975019 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.76 | 66.0 | 6.22e-01 | 100.0% | 77.2% |
| 4024559 | 4970.1.1.2 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A | 0.67 | 63.0 | 5.52e-01 | 100.0% | 69.1% |
| 5057428 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.64 | 39.0 | 4.26e-01 | 100.0% | 72.4% |
| 3605252 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.64 | 36.0 | 3.27e-01 | 97.6% | 41.2% |
| 3695505 | 604.3.1.11 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 | 0.63 | 40.0 | 4.15e-01 | 93.5% | 68.7% |
| 4856390 | 5037.1.1.2 ↗ | alpha bundles › Bacterial photosystem II reaction centre L and M subunits-like › Bacterial photosystem II reaction centre L and M subunits-like › Bacterial photosystem II reaction centre L and M subunits-like › PsaA_PsaB | 0.62 | 47.0 | 3.31e-01 | 100.0% | 26.7% |
| 4190833 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.62 | 45.0 | 4.62e-01 | 100.0% | 77.5% |
| 3856852 | 310.2.1.19 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RasGAP_C | 0.53 | 33.0 | 3.47e-01 | 97.6% | 67.8% |
| 3683441 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 30.0 | 2.44e-01 | 90.2% | 27.7% |
| 4965651 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.53 | 48.0 | 4.25e-01 | 96.7% | 71.8% |
| 3617531 | 7015.1.1.1 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC | 0.53 | 45.0 | 3.59e-01 | 94.3% | 84.7% |
| 3631951 | 3755.3.1.355 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Uds1 | 0.52 | 45.0 | 4.26e-01 | 96.7% | 77.9% |
| 3841584 | 633.21.1.44 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › SCAMP | 0.51 | 45.0 | 4.26e-01 | 92.7% | 99.3% |
| 4264893 | 150.3.1.6 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IL10 | 0.51 | 43.0 | 3.93e-01 | 92.7% | 70.0% |
| 4520038 | 3291.1.1.55 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Vma22_CCDC115 | 0.50 | 45.0 | 4.46e-01 | 96.7% | 93.8% |
D3
medium
residues 224-276
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vhlA02 | 1.20.58.740 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C | 0.62 | 53.0 | 4.07e-01 | 100.0% | 41.7% |
| 6d5xA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.62 | 56.0 | 3.98e-01 | 100.0% | 36.4% |
| 4c9yA00 | 1.10.10.1890 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like | 0.60 | 51.0 | 4.00e-01 | 100.0% | 52.8% |
| 1lvlA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 53.0 | 3.48e-01 | 100.0% | 26.3% |
| 4rncA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 39.0 | 2.60e-01 | 88.7% | 71.2% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5026123 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.67 | 55.0 | 4.96e-01 | 94.3% | 74.7% |
| 3864929 | 192.29.1.1 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom | 0.63 | 54.0 | 4.71e-01 | 100.0% | 62.4% |
| 4612826 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.62 | 55.0 | 4.80e-01 | 100.0% | 66.3% |
| 3409846 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.61 | 53.0 | 3.11e-01 | 94.3% | 17.6% |