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KY549443.1__APZ82050.1__EFP01_123__00123

Bact-Vir

KY549443.1__APZ82050.1__EFP01_123__00123

Identity

Accession:
KY549443 ↗
Kingdom:
phage

Quality

86.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Schiekvirus› Enterococcus_phage_EFP01

TaxID: 1926594

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-106
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03477.22 best ATP-cone 60.9 2.00e-16 98.9% 96.6%
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6rxaA01 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.70 53.0 5.47e-01 95.7% 83.9%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.68 55.0 5.70e-01 100.0% 94.2%
2vqxA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.68 60.0 4.97e-01 98.9% 98.8%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.67 49.0 5.09e-01 82.6% 80.7%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.67 50.0 5.20e-01 84.8% 88.0%
1bqbA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.66 59.0 5.07e-01 98.9% 100.0%
1lp1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.63 35.0 4.28e-01 92.4% 89.1%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.62 56.0 4.85e-01 100.0% 73.8%
1guxB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 54.0 4.71e-01 98.9% 63.8%
5jazA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.62 44.0 4.42e-01 73.9% 80.2%
3hmfA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.61 51.0 4.81e-01 94.6% 98.3%
2y1eA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.61 44.0 4.50e-01 81.5% 80.5%
4i8qA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.61 44.0 3.05e-01 76.1% 55.3%
2igsA00 1.10.3690.10 Mainly Alpha › Orthogonal Bundle › PA2222-like fold › PA2222-like domain 0.61 46.0 3.50e-01 80.4% 95.8%
3qnmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 46.0 4.70e-01 84.8% 90.0%
4kk2B00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.59 51.0 3.55e-01 100.0% 40.2%
3lomA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.58 46.0 3.35e-01 89.1% 42.7%
3ddlA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.57 48.0 3.54e-01 94.6% 86.5%
6cgvM01 1.20.120.1500 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pre-hexon-linking protein IIIa 0.56 37.0 3.34e-01 88.0% 47.0%
1fx0A03 1.20.150.20 Mainly Alpha › Up-down Bundle › Lysin › ATP synthase alpha/beta chain, C-terminal domain 0.55 41.0 3.77e-01 81.5% 99.2%
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 41.0 3.69e-01 79.3% 66.7%
2qeuB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.55 40.0 3.53e-01 89.1% 52.6%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.55 45.0 4.53e-01 90.2% 92.2%
2ky4A01 1.10.3130.20 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › Phycobilisome linker domain 0.54 48.0 4.27e-01 98.9% 94.7%
4hfkB00 1.20.120.1620 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.53 40.0 3.98e-01 80.4% 76.5%
2qytA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.53 43.0 4.26e-01 91.3% 98.0%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.52 46.0 4.06e-01 100.0% 70.2%
3n3uA00 1.10.3290.10 Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain 0.52 44.0 3.17e-01 96.7% 64.6%
1jwjA01 3.90.340.10 Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 0.51 42.0 3.55e-01 94.6% 67.5%
7r8bB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 40.0 2.94e-01 87.0% 29.1%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.51 41.0 3.70e-01 91.3% 71.7%
2copA00 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.50 36.0 3.42e-01 75.0% 77.1%
3ma5A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 36.0 3.68e-01 100.0% 76.7%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3946182 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.95 87.0 8.82e-01 98.9% 96.7%
3980780 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.95 87.0 8.81e-01 98.9% 96.7%
5066162 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.94 88.0 8.55e-01 98.9% 90.0%
4211419 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.94 90.0 8.22e-01 100.0% 87.0%
5058165 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.94 81.0 8.40e-01 100.0% 96.5%
4681348 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.93 89.0 8.63e-01 100.0% 96.0%
1878970 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.93 89.0 8.53e-01 100.0% 93.2%
4934727 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.93 89.0 8.79e-01 100.0% 96.8%
2141738 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.93 88.0 8.59e-01 100.0% 94.9%
3989376 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.92 88.0 8.39e-01 100.0% 88.6%
4927666 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.92 88.0 8.51e-01 100.0% 94.0%
4993731 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.92 86.0 8.22e-01 100.0% 86.7%
4957090 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.91 86.0 8.55e-01 98.9% 95.8%
4096162 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.91 85.0 8.27e-01 98.9% 100.0%
5034061 148.1.3.400 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Ribonuc_red_lgN 0.91 87.0 6.60e-01 100.0% 48.9%
4895331 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.91 77.0 7.81e-01 88.0% 91.1%
5074671 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.91 77.0 8.02e-01 100.0% 96.5%
5001059 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.90 74.0 7.87e-01 95.7% 97.5%
4956905 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.90 74.0 7.88e-01 95.7% 97.5%
4996564 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.89 77.0 8.06e-01 100.0% 98.8%
5042563 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.89 77.0 8.06e-01 100.0% 98.8%
4989754 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.89 72.0 7.70e-01 95.7% 97.5%
4507907 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.89 76.0 7.94e-01 97.8% 97.6%
5057106 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.89 80.0 8.17e-01 97.8% 97.8%
4943010 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.89 78.0 8.13e-01 96.7% 100.0%
4946727 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.88 71.0 7.60e-01 93.5% 97.5%
4160317 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.87 78.0 7.12e-01 100.0% 75.7%
4238441 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.87 72.0 7.67e-01 92.4% 100.0%
4466734 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.86 76.0 6.97e-01 98.9% 74.8%
4388542 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.86 76.0 7.43e-01 100.0% 87.0%
3597638 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.85 71.0 7.57e-01 97.8% 100.0%
4056578 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.85 74.0 6.96e-01 95.7% 77.3%
5051773 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.85 74.0 7.53e-01 100.0% 95.6%
4257906 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.82 74.0 7.57e-01 100.0% 98.9%
5043182 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.81 75.0 7.28e-01 98.9% 98.0%
2791177 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.81 72.0 6.88e-01 100.0% 83.0%
5004355 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.78 71.0 7.21e-01 97.8% 100.0%
4997861 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.69 53.0 5.30e-01 90.2% 78.9%
4944387 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.69 59.0 5.65e-01 98.9% 81.9%
3339942 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.68 54.0 4.71e-01 98.9% 57.8%
3614578 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 47.0 4.86e-01 82.6% 77.6%
5012908 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.67 49.0 3.20e-01 90.2% 17.7%
4999090 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.66 52.0 4.67e-01 87.0% 60.0%
3594498 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 41.0 4.57e-01 76.1% 82.9%
5031192 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.65 50.0 5.04e-01 90.2% 83.3%
3258339 101.1.10.12 ↗ alpha arrays › HTH › HTH › Cyclin-like › Spy1 0.63 57.0 4.93e-01 98.9% 69.3%
5009804 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 47.0 4.70e-01 81.5% 81.1%
3396226 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.62 50.0 3.72e-01 88.0% 94.2%
3215219 371.1.1.0 ↗ few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 0.61 48.0 4.53e-01 82.6% 78.7%
3691496 6088.1.1.0 ↗ alpha arrays › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A 0.61 50.0 4.89e-01 89.1% 84.0%
4155755 1149.1.1.1 ↗ alpha bundles › CRISPR-Cas system second helical domain › CRISPR-Cas system second helical domain › CRISPR-Cas system RNase C2c2 second helical domain › Cas13a_endoribonuclease 0.58 46.0 3.63e-01 84.8% 67.2%
3391169 103.4.1.25 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF27628 0.58 39.0 4.31e-01 88.0% 91.4%
3408417 2006.1.1.44 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.58 48.0 3.55e-01 96.7% 34.0%
3590231 162.1.1.0 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.56 40.0 3.85e-01 73.9% 92.4%
3212942 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.56 42.0 3.78e-01 81.5% 63.7%
5065965 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.56 44.0 3.32e-01 85.9% 34.8%
3352830 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.55 38.0 3.30e-01 98.9% 47.4%
5053233 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.55 43.0 4.49e-01 84.8% 91.8%
4864636 7008.1.1.1 ↗ alpha arrays › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › Hex_IIIa 0.55 36.0 3.64e-01 91.3% 63.9%
3994910 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.54 38.0 3.29e-01 73.9% 90.7%
3651414 109.4.1.1261 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long 0.53 38.0 3.27e-01 98.9% 46.9%
3938616 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.52 38.0 3.76e-01 85.9% 74.7%
3832196 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 37.0 3.61e-01 90.2% 66.7%
3817996 109.4.1.2333 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, TPR_At1g68980 0.50 38.0 2.34e-01 100.0% 13.6%
4055376 633.11.1.1 ↗ alpha bundles › Bromodomain-like › Nqo1C-terminal domain-like › Nqo1C-terminal domain-like › NADH_4Fe-4S 0.50 38.0 3.70e-01 80.4% 74.0%
D2 high residues 111-169
PDB
Domain cluster: rep: OQ076693.1__WBM23587.1__X__00173__D3-60