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KY549659.1__AQT27907.1__CB4_65__00065

Bact-Vir

KY549659.1__AQT27907.1__CB4_65__00065

Identity

Accession:
KY549659 ↗
Kingdom:
phage

Quality

76.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Cbunavirus› Pectobacterium_phage_vB_PatP_CB4

TaxID: 1958919

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 109-192
PDB
Domain cluster: rep: RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00468__D116-186
D2 high residues 204-290
PDB
Domain cluster: rep: MZ501051.1__QXV76169.1__bas01_0038__00038__D174-271
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18668.7 best Tail_spike_N 64.5 1.10e-17 81.6% 85.7%
D3 high residues 300-397
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21562.3 best Gp63_3rd_G7C 90.4 7.30e-26 66.3% 98.5%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hizA01 3.30.750.60 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › Endosialidase, N-terminal extension domain 0.71 32.0 4.67e-01 74.5% 100.0%
3ju4A01 3.30.750.60 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › Endosialidase, N-terminal extension domain 0.68 46.0 5.28e-01 70.4% 95.8%
1qjvA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.59 51.0 3.53e-01 95.9% 68.4%
1mdbA02 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 44.0 3.69e-01 86.7% 78.7%
3tlfD01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.55 39.0 3.16e-01 75.5% 63.9%
1v1aA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 37.0 2.66e-01 72.4% 34.2%
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.52 37.0 3.89e-01 76.5% 97.8%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.52 36.0 3.73e-01 73.5% 76.9%
2hlzA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 38.0 2.78e-01 79.6% 71.3%
1wyuA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.51 43.0 3.23e-01 94.9% 59.5%
6wb4B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 41.0 2.97e-01 90.8% 58.0%
3h14A00 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.50 39.0 2.70e-01 84.7% 38.4%
2q34A01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.50 38.0 3.20e-01 80.6% 93.3%
6sshA01 3.40.50.11210 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Rap/Ran-GAP 0.50 35.0 2.95e-01 74.5% 84.3%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1563555 207.2.1.30 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Gp63_3rd_G7C 0.91 71.0 7.87e-01 80.6% 100.0%
3284206 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.56 46.0 4.04e-01 91.8% 93.3%
2581340 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.55 39.0 4.12e-01 74.5% 83.9%
4278931 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.55 45.0 3.29e-01 92.9% 86.0%
3269867 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.55 41.0 3.04e-01 79.6% 52.1%
5078707 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.55 41.0 3.00e-01 81.6% 64.5%
3845121 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.53 44.0 3.45e-01 91.8% 82.3%
5000464 2003.1.9.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins 0.53 40.0 3.15e-01 81.6% 91.6%
4941788 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.53 45.0 3.23e-01 98.0% 96.6%
5026772 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.52 44.0 3.02e-01 94.9% 50.5%
2142345 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.52 35.0 3.61e-01 71.4% 73.1%
3898322 2002.4.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › NAPRTase 0.52 41.0 2.91e-01 88.8% 54.3%
3614493 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 37.0 2.66e-01 75.5% 84.5%
3242648 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.51 36.0 3.03e-01 76.5% 82.2%
D4 medium residues 22-104
PDB
Domain cluster: representative