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KY554761.1__ARM65555.1__R31_004__00004

Bact-Vir

KY554761.1__ARM65555.1__R31_004__00004

Identity

Accession:
KY554761 ↗
Kingdom:
phage

Quality

69.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Skunavirus› Lactococcus_phage_R31

TaxID: 1965484

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-58
PDB
D2 medium residues 59-136
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3517895 5054.1.1.59 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 0.55 47.0 3.13e-01 98.7% 45.2%
D3 medium residues 137-186
PDB
Domain cluster: rep: OM654374.1__UNY40108.1__KLEA5_gp04__00004__D345-405
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2iufA02 1.20.1370.20 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Catalase, four-helical domain 0.60 48.0 3.89e-01 100.0% 45.9%
6o1wA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 44.0 2.85e-01 82.0% 51.8%
1lvaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 4.07e-01 84.0% 98.4%
3rnrB00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.57 39.0 2.69e-01 74.0% 59.2%
4c3sA02 3.40.309.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 0.57 42.0 2.92e-01 82.0% 53.8%
1qbjC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 4.12e-01 88.0% 100.0%
7y11A01 3.40.525.10 Alpha Beta › 3-Layer(aba) Sandwich › Phosphatidylinositol Transfer Protein Sec14p › CRAL-TRIO lipid binding domain 0.57 39.0 2.64e-01 72.0% 60.0%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 41.0 3.91e-01 90.0% 95.1%
3mq0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.55e-01 84.0% 76.6%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 3.41e-01 84.0% 75.0%
2k9sA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 42.0 3.43e-01 96.0% 83.2%
1t6sB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.68e-01 92.0% 94.8%
1z05A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.57e-01 86.0% 65.3%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.27e-01 82.0% 52.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943006 4038.1.1.1 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal 0.77 56.0 3.48e-01 80.0% 14.5%
2774953 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.66 53.0 4.50e-01 92.0% 77.0%
3944775 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.62 48.0 4.58e-01 88.0% 95.0%
3949408 2498.1.1.52 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF3152 0.61 45.0 3.01e-01 80.0% 28.8%
4066144 4954.1.1.1 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.60 37.0 2.40e-01 98.0% 13.5%
5081623 206.1.3.119 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › LAL_C2 0.59 43.0 2.67e-01 78.0% 24.3%
3969859 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.57 45.0 4.26e-01 88.0% 95.0%
3959565 4954.1.1.0 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit 0.57 46.0 3.06e-01 96.0% 53.3%
5069368 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.56 40.0 3.80e-01 86.0% 65.0%
3598389 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.55 40.0 3.03e-01 78.0% 67.5%
3972517 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.54 43.0 3.49e-01 94.0% 99.1%
4998401 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 41.0 4.11e-01 84.0% 100.0%
3981170 101.1.2.6 ↗ alpha arrays › HTH › HTH › winged helix domain › GntR 0.54 41.0 3.75e-01 86.0% 97.1%
4034245 101.1.1.2 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.53 41.0 3.85e-01 90.0% 84.6%
5000528 101.1.2.92 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.53 40.0 3.42e-01 88.0% 70.0%
5059709 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 3.70e-01 88.0% 95.0%