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KY606587.1__ARB06080.1__vBDshSR5C_26__00026
Bact-VirKY606587.1__ARB06080.1__vBDshSR5C_26__00026
Identity
- Accession:
- KY606587 ↗
- Kingdom:
- phage
Quality
74.3
mean pLDDT
Taxonomy
TaxID: 1965368
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-62
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.83 | 54.0 | 3.50e-01 | 96.7% | 17.2% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.70 | 39.0 | 3.37e-01 | 77.0% | 35.2% |
| 3mk7C01 | 6.10.280.130 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 52.0 | 4.56e-01 | 82.0% | 88.3% |
| 1ewqA04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.69 | 53.0 | 4.09e-01 | 83.6% | 64.7% |
| 1i1iP02 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.66 | 42.0 | 3.14e-01 | 75.4% | 26.5% |
| 1s7iA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.64 | 53.0 | 4.16e-01 | 90.2% | 57.3% |
| 3g2eB00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.64 | 43.0 | 3.14e-01 | 77.0% | 23.8% |
| 6tmfM00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.64 | 49.0 | 4.17e-01 | 85.2% | 65.7% |
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.62 | 49.0 | 4.33e-01 | 86.9% | 61.1% |
| 3e05B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.61 | 44.0 | 3.08e-01 | 75.4% | 26.6% |
| 3aonA00 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 54.0 | 3.83e-01 | 100.0% | 45.2% |
| 3bwnD01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.61 | 49.0 | 3.76e-01 | 88.5% | 38.9% |
| 3dcaA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 48.0 | 3.77e-01 | 86.9% | 46.9% |
| 1kaxA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.60 | 32.0 | 3.36e-01 | 78.7% | 54.5% |
| 4lxjA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.60 | 50.0 | 3.09e-01 | 95.1% | 46.0% |
| 1vb5B02 | 3.40.50.10470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 | 0.59 | 35.0 | 2.50e-01 | 77.0% | 19.9% |
| 7xlqD01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 44.0 | 3.50e-01 | 82.0% | 74.4% |
| 1kfiA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.58 | 46.0 | 3.70e-01 | 88.5% | 79.2% |
| 1l3iA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 41.0 | 2.97e-01 | 75.4% | 27.6% |
| 2o36A02 | 1.10.1370.10 | Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › Neurolysin, domain 3 | 0.57 | 48.0 | 2.96e-01 | 93.4% | 72.3% |
| 5jldA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.57 | 47.0 | 3.17e-01 | 90.2% | 79.4% |
| 2bkwA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.57 | 48.0 | 3.90e-01 | 96.7% | 88.3% |
| 5ccbA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 40.0 | 2.85e-01 | 78.7% | 34.3% |
| 3mb5A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 39.0 | 2.82e-01 | 75.4% | 30.1% |
| 4lgvD02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.56 | 44.0 | 3.01e-01 | 93.4% | 35.5% |
| 3dktA01 | 3.30.2400.30 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › | 0.55 | 46.0 | 3.48e-01 | 98.4% | 49.1% |
| 1o54A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 39.0 | 2.80e-01 | 75.4% | 28.5% |
| 4d10F01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.54 | 42.0 | 3.03e-01 | 86.9% | 28.5% |
| 1j5wB01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.54 | 39.0 | 2.75e-01 | 75.4% | 39.8% |
| 3bzwF00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.53 | 40.0 | 2.77e-01 | 85.2% | 66.3% |
| 1qmgB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 37.0 | 2.60e-01 | 77.0% | 28.7% |
| 5vogA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 40.0 | 2.92e-01 | 85.2% | 77.8% |
| 7b1xA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 43.0 | 2.76e-01 | 91.8% | 98.0% |
| 4f0aB02 | 3.30.2460.20 | Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Wnt (Wingless and Int-1), C-terminal domain | 0.51 | 37.0 | 3.64e-01 | 78.7% | 85.3% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 35.0 | 3.09e-01 | 73.8% | 45.5% |
| 4pibA00 | 2.60.40.3910 | Mainly Beta › Sandwich › Immunoglobulin-like › Inclusion body protein | 0.51 | 36.0 | 2.73e-01 | 77.0% | 91.4% |
| 4n6tA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 40.0 | 3.68e-01 | 85.2% | 65.8% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3982740 | 5086.1.1.190 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › OEP | 0.80 | 55.0 | 3.68e-01 | 96.7% | 21.5% |
| 5037750 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.78 | 60.0 | 4.13e-01 | 82.0% | 54.9% |
| 3370992 | 304.48.1.21 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Thg1,Thg1C | 0.74 | 58.0 | 3.37e-01 | 82.0% | 19.1% |
| 3912477 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.73 | 65.0 | 4.12e-01 | 100.0% | 85.6% |
| 4931347 | 5001.1.1.12 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Heliorhodopsin | 0.73 | 65.0 | 4.22e-01 | 98.4% | 95.8% |
| 4932518 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.73 | 55.0 | 4.73e-01 | 80.3% | 53.7% |
| 5050213 | 192.2.1.87 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ATP-synt_D | 0.72 | 55.0 | 3.86e-01 | 82.0% | 58.4% |
| 3385473 | 3747.1.1.2 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C | 0.71 | 64.0 | 5.24e-01 | 100.0% | 68.2% |
| 4474711 | 3747.1.1.2 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C | 0.71 | 62.0 | 5.18e-01 | 96.7% | 62.9% |
| 5016545 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.71 | 57.0 | 4.21e-01 | 88.5% | 38.0% |
| 4990821 | 7571.1.1.1 ↗ | a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N | 0.68 | 42.0 | 2.74e-01 | 83.6% | 13.8% |
| 3636696 | 3745.1.1.1 ↗ | alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex | 0.68 | 55.0 | 3.32e-01 | 88.5% | 63.9% |
| 4979212 | 2011.1.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases | 0.66 | 51.0 | 3.25e-01 | 83.6% | 17.8% |
| 3255418 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.66 | 57.0 | 3.51e-01 | 96.7% | 57.7% |
| 4025707 | 4001.1.1.4 ↗ | a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › Cullin_AB | 0.64 | 52.0 | 4.11e-01 | 88.5% | 69.2% |
| 5080213 | 3281.1.1.0 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related | 0.63 | 53.0 | 3.19e-01 | 98.4% | 22.0% |
| 3740450 | 328.1.1.3 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 | 0.63 | 46.0 | 4.05e-01 | 78.7% | 61.1% |
| 4538250 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.62 | 44.0 | 3.45e-01 | 75.4% | 37.8% |
| 3427022 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.62 | 56.0 | 4.70e-01 | 98.4% | 91.0% |
| 3957223 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.61 | 54.0 | 3.21e-01 | 96.7% | 67.1% |
| 3611853 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.61 | 49.0 | 3.26e-01 | 90.2% | 22.1% |
| 4313221 | 2004.1.1.552 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T4SS-DNA_transf, TraG-D_C | 0.61 | 49.0 | 2.84e-01 | 85.2% | 17.0% |
| 4282814 | 304.30.1.1 ↗ | a+b two layers › Alpha-beta plaits › D-ribose-5-phosphate isomerase (RpiA), lid domain › D-ribose-5-phosphate isomerase (RpiA), lid domain › Rib_5-P_isom_A | 0.61 | 40.0 | 3.78e-01 | 73.8% | 56.0% |
| 4336917 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.61 | 43.0 | 3.04e-01 | 75.4% | 26.2% |
| 5022277 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.61 | 43.0 | 3.39e-01 | 75.4% | 39.2% |
| None | — | 0.60 | 42.0 | 3.02e-01 | 73.8% | 27.0% | |
| 4260992 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.60 | 43.0 | 3.04e-01 | 75.4% | 26.8% |
| 3289443 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.60 | 53.0 | 3.29e-01 | 100.0% | 56.1% |
| 4201013 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.59 | 50.0 | 3.06e-01 | 96.7% | 52.7% |
| 4986411 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.59 | 42.0 | 2.96e-01 | 75.4% | 25.8% |
| 3952678 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.59 | 43.0 | 3.81e-01 | 78.7% | 54.4% |
| 5004023 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.58 | 41.0 | 3.00e-01 | 75.4% | 28.3% |
| 9346 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.58 | 41.0 | 2.97e-01 | 75.4% | 27.4% |
| 4116848 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.58 | 49.0 | 3.02e-01 | 96.7% | 52.7% |
| None | — | 0.58 | 41.0 | 2.97e-01 | 75.4% | 27.6% | |
| 5056319 | 177.1.1.0 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease | 0.58 | 44.0 | 3.16e-01 | 83.6% | 28.1% |
| 3728856 | 171.1.1.9 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 | 0.56 | 48.0 | 3.34e-01 | 100.0% | 80.4% |
| 4961538 | 2002.1.1.256 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MSH_C | 0.56 | 41.0 | 2.43e-01 | 77.0% | 13.7% |
| 4938781 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.56 | 40.0 | 3.00e-01 | 78.7% | 31.5% |
| 5073695 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.56 | 43.0 | 3.63e-01 | 83.6% | 84.0% |
| 4944561 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.56 | 41.0 | 3.46e-01 | 78.7% | 78.0% |
| 3612987 | 206.1.3.12 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL | 0.55 | 44.0 | 3.26e-01 | 88.5% | 61.3% |
| 5052927 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 50.0 | 3.76e-01 | 98.4% | 71.1% |
| 3587666 | 330.1.1.11 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DUF1071 | 0.54 | 37.0 | 2.96e-01 | 73.8% | 45.9% |
| 3483062 | 221.1.1.116 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_6 | 0.53 | 41.0 | 3.26e-01 | 82.0% | 75.0% |
| 4938548 | 3010.1.1.2 ↗ | a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C | 0.52 | 37.0 | 2.99e-01 | 75.4% | 98.3% |
| 5030500 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.52 | 40.0 | 3.16e-01 | 88.5% | 48.6% |
| 4903241 | 327.3.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C | 0.51 | 43.0 | 3.67e-01 | 91.8% | 76.3% |
| 4679580 | 7527.1.1.1 ↗ | a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE | 0.51 | 37.0 | 2.57e-01 | 82.0% | 40.4% |