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KY612839.1__ARM71010.1__pVco5_022__00022

Bact-Vir

KY612839.1__ARM71010.1__pVco5_022__00022

Identity

Accession:
KY612839 ↗
Kingdom:
phage

Quality

75.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-44
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.79 64.0 3.63e-01 92.9% 96.9%
2n54B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.78 68.0 5.90e-01 100.0% 63.6%
2f68X01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.76 64.0 4.52e-01 100.0% 34.8%
3afcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.75 63.0 3.55e-01 95.2% 95.8%
1pj5A02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.75 64.0 4.22e-01 100.0% 27.0%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.72 62.0 4.75e-01 100.0% 43.9%
5uaoC00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.72 60.0 3.38e-01 100.0% 8.0%
3ttcA03 3.30.420.360 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.71 58.0 4.28e-01 97.6% 38.0%
3ottA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.71 60.0 3.63e-01 100.0% 99.3%
3al9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.71 56.0 3.21e-01 92.9% 99.8%
1qnaA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.71 58.0 4.67e-01 100.0% 64.5%
1y4oA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.70 61.0 4.59e-01 100.0% 73.1%
2dmwA01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.69 60.0 4.37e-01 100.0% 55.2%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.68 59.0 4.61e-01 100.0% 94.6%
2iz4A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.68 55.0 5.33e-01 95.2% 100.0%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.68 55.0 3.32e-01 100.0% 90.5%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.68 60.0 5.10e-01 100.0% 95.5%
1vx7X00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.68 57.0 4.36e-01 95.2% 57.7%
1aisA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.67 53.0 4.28e-01 90.5% 63.2%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.66 55.0 3.35e-01 100.0% 95.6%
4mnkA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.65 53.0 4.69e-01 95.2% 100.0%
3w4rA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.65 53.0 4.43e-01 95.2% 100.0%
3alfA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.64 53.0 4.54e-01 95.2% 100.0%
1owqA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.64 50.0 4.39e-01 90.5% 100.0%
4uriA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.64 52.0 4.75e-01 95.2% 100.0%
3fmwC02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 51.0 4.29e-01 97.6% 51.3%
1m3qA01 3.30.310.40 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.63 54.0 4.29e-01 100.0% 77.5%
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.63 52.0 2.98e-01 97.6% 8.6%
1xhhA00 2.60.40.1900 Mainly Beta › Sandwich › Immunoglobulin-like › Beta-microseminoprotein (PSP94) domain 0.62 50.0 4.04e-01 95.2% 53.8%
3rkgA01 2.40.128.330 Mainly Beta › Beta Barrel › Lipocalin › 0.62 53.0 4.16e-01 100.0% 83.0%
2zvfA02 3.10.310.40 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.62 45.0 3.44e-01 81.0% 54.7%
6frlA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 47.0 2.75e-01 100.0% 8.8%
3u6xS00 2.60.40.3320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 51.0 3.97e-01 100.0% 74.3%
2l04A00 2.60.40.1080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 52.0 4.13e-01 100.0% 48.4%
7m0oA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.61 52.0 3.44e-01 100.0% 23.9%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.61 47.0 3.94e-01 100.0% 81.1%
6inxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 47.0 4.19e-01 95.2% 100.0%
5ghrA02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.58 46.0 3.50e-01 100.0% 39.2%
1kfwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 48.0 4.28e-01 100.0% 100.0%
1byuB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 44.0 2.82e-01 92.9% 25.6%
5m8cB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.58e-01 90.5% 77.6%
2de6A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 41.0 3.87e-01 97.6% 98.3%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 45.0 2.78e-01 95.2% 75.9%
3r74B02 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.52 41.0 2.81e-01 100.0% 97.9%
2eaqA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 41.0 3.42e-01 100.0% 94.4%
4cucA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.09e-01 100.0% 61.2%
1pwkA00 3.30.740.10 Alpha Beta › 2-Layer Sandwich › Protein Inhibitor Of Neuronal Nitric Oxide Synthase › Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 0.50 42.0 3.35e-01 100.0% 45.1%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3709300 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.82 68.0 3.69e-01 92.9% 47.3%
3924833 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.80 73.0 5.11e-01 100.0% 60.0%
3212404 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.79 67.0 4.12e-01 97.6% 21.6%
4062529 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.78 68.0 5.25e-01 100.0% 45.6%
3246463 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.78 67.0 4.15e-01 97.6% 23.5%
5018772 304.55.2.0 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like 0.78 68.0 5.22e-01 100.0% 45.3%
3516397 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.77 64.0 4.16e-01 95.2% 68.1%
4477489 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.77 64.0 4.31e-01 92.9% 26.2%
None 0.77 65.0 3.72e-01 100.0% 9.9%
None 0.76 67.0 3.78e-01 100.0% 9.6%
4070240 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.76 66.0 3.76e-01 100.0% 9.4%
None 0.76 66.0 3.76e-01 100.0% 9.5%
4019237 304.48.1.37 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 0.76 66.0 4.10e-01 100.0% 42.6%
4055607 244.1.1.4 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO 0.76 66.0 4.45e-01 100.0% 26.5%
3970174 2003.1.3.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.76 66.0 3.76e-01 100.0% 9.6%
4047645 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.75 66.0 3.74e-01 100.0% 9.4%
4976967 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.75 67.0 4.51e-01 100.0% 56.0%
3226237 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.75 64.0 3.91e-01 97.6% 21.2%
3222321 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.75 63.0 3.89e-01 97.6% 21.2%
3228574 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.74 63.0 3.89e-01 97.6% 21.7%
4552219 244.1.1.5 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › FAD_binding_3 0.74 64.0 4.00e-01 95.2% 18.6%
None 0.74 65.0 3.69e-01 100.0% 9.6%
3227180 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.74 62.0 3.88e-01 97.6% 23.9%
4962251 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.74 66.0 4.55e-01 100.0% 63.7%
3910321 391.1.2.23 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWD 0.73 61.0 3.86e-01 100.0% 60.0%
3233815 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.72 60.0 3.74e-01 97.6% 24.0%
3765955 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.72 60.0 3.43e-01 97.6% 93.3%
3412604 5.1.4.224 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 0.71 61.0 3.64e-01 100.0% 94.3%
3217555 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.71 61.0 3.72e-01 97.6% 21.2%
3838220 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.71 60.0 4.16e-01 100.0% 28.6%
5046444 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.71 62.0 4.28e-01 100.0% 54.3%
4086531 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.71 62.0 3.53e-01 100.0% 9.5%
3243132 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.70 59.0 3.72e-01 97.6% 24.7%
4985746 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 63.0 4.62e-01 100.0% 62.9%
3242542 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.70 57.0 3.57e-01 97.6% 21.6%
3223252 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.70 57.0 3.56e-01 97.6% 22.3%
3225668 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.70 57.0 3.64e-01 95.2% 23.5%
4027719 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.70 56.0 3.35e-01 95.2% 100.0%
3303541 331.18.1.6 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › AAA_assoc 0.69 59.0 4.40e-01 100.0% 74.5%
4011873 244.1.1.11 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › SE 0.68 56.0 4.46e-01 100.0% 48.4%
5045351 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 59.0 4.36e-01 100.0% 60.9%
4227815 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.67 57.0 3.37e-01 100.0% 21.0%
3194649 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.66 54.0 3.01e-01 100.0% 99.3%
3442415 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.66 55.0 3.23e-01 100.0% 19.3%
1503942 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.66 52.0 4.73e-01 90.5% 100.0%
3353658 284.2.1.1 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 0.66 55.0 3.25e-01 100.0% 20.0%
3834882 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.66 55.0 3.26e-01 100.0% 21.2%
4039417 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.66 54.0 3.32e-01 100.0% 95.0%
3721847 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.65 55.0 3.07e-01 100.0% 95.3%
3829628 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.65 51.0 4.28e-01 92.9% 83.7%
415434 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.65 53.0 4.53e-01 95.2% 100.0%
3798405 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.64 54.0 3.16e-01 100.0% 20.3%
3586982 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 54.0 4.49e-01 100.0% 52.5%
5046576 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 53.0 3.61e-01 100.0% 42.9%
2475221 284.2.1.1 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 0.63 51.0 4.44e-01 95.2% 100.0%
3822561 284.2.1.1 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 0.63 51.0 4.04e-01 97.6% 83.0%
3361094 284.2.1.1 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 0.63 52.0 3.12e-01 100.0% 20.8%
3866570 327.11.2.61 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_2 0.62 53.0 4.78e-01 97.6% 68.3%
5016697 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.62 54.0 4.61e-01 100.0% 60.0%
4268439 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.62 51.0 4.03e-01 97.6% 73.7%
4261505 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.60 47.0 4.18e-01 90.5% 100.0%
3921177 3761.1.1.0 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.59 40.0 3.78e-01 71.4% 58.2%
3225850 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.58 46.0 4.41e-01 90.5% 100.0%
4957627 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.58 46.0 3.58e-01 100.0% 37.4%
3479505 10.21.1.1 beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 0.57 48.0 3.32e-01 100.0% 81.3%
3722522 4956.1.1.0 a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.57 46.0 3.75e-01 97.6% 77.8%
4993382 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.52 41.0 3.28e-01 95.2% 65.3%
3257651 2.9.1.1 beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.50 42.0 2.36e-01 100.0% 7.6%