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KY612839.1__ARM71045.1__pVco5_057__00057

Bact-Vir

KY612839.1__ARM71045.1__pVco5_057__00057

Identity

Accession:
KY612839 ↗
Kingdom:
phage

Quality

81.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Vicoquintavirus› Vibrio_phage_pVco-5

TaxID: 1965485

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-83
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.78 50.0 4.23e-01 100.0% 41.2%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.65 42.0 4.77e-01 100.0% 94.4%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.56e-01 98.7% 77.5%
1vwxM01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 4.10e-01 100.0% 63.5%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 38.0 4.25e-01 94.7% 83.9%
4tpsA00 3.30.310.250 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA 0.59 51.0 4.18e-01 96.1% 94.3%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.59 39.0 4.32e-01 96.1% 91.4%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.58 45.0 4.54e-01 96.1% 85.5%
2m0yA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 42.0 4.25e-01 100.0% 82.4%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 42.0 3.68e-01 98.7% 52.1%
4lbhA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.56 49.0 4.63e-01 100.0% 98.9%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 43.0 4.60e-01 98.7% 100.0%
1q8bA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 48.0 4.57e-01 100.0% 100.0%
3bb5A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 47.0 4.30e-01 98.7% 100.0%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 40.0 4.27e-01 96.1% 100.0%
3i4pA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.54 47.0 4.60e-01 98.7% 89.3%
1yrxC01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 47.0 4.26e-01 100.0% 79.8%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.53 40.0 4.07e-01 98.7% 85.5%
1r6yA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 45.0 4.20e-01 100.0% 100.0%
3mahA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 44.0 4.60e-01 96.1% 100.0%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 44.0 4.42e-01 93.4% 97.3%
3bdeB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 45.0 4.23e-01 100.0% 100.0%
2gffA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 45.0 4.25e-01 100.0% 94.8%
1rjjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 45.0 4.06e-01 100.0% 90.1%
1vqyB01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 45.0 4.25e-01 100.0% 100.0%
6k2eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 41.0 4.27e-01 96.1% 98.5%
1yjrA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 43.0 4.41e-01 93.4% 96.0%
2dbbA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.52 45.0 4.26e-01 100.0% 82.8%
1jwwA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 44.0 4.33e-01 96.1% 92.5%
3bn7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 44.0 4.09e-01 100.0% 100.0%
2y8yA01 3.30.70.1200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 0.51 45.0 4.38e-01 100.0% 95.3%
5k9fA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 44.0 4.04e-01 100.0% 95.1%
1gmuA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.51 36.0 3.81e-01 94.7% 86.6%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.51 45.0 4.21e-01 98.7% 100.0%
2lu2A00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 44.0 4.41e-01 100.0% 100.0%
1fvqA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 43.0 4.47e-01 94.7% 100.0%
3tj8A02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.51 38.0 3.83e-01 96.1% 82.4%
2ofhX00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 42.0 4.35e-01 92.1% 100.0%
3fgvA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 43.0 4.05e-01 97.4% 100.0%
1whvA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 40.0 3.72e-01 96.1% 68.0%
1mwyA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 42.0 4.33e-01 96.1% 98.6%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4036705 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.80 52.0 4.19e-01 100.0% 37.0%
4493478 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.80 52.0 4.29e-01 100.0% 39.2%
4937731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 46.0 5.04e-01 96.1% 80.0%
4964211 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 45.0 5.32e-01 96.1% 100.0%
4571610 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.69 40.0 4.45e-01 98.7% 74.6%
4948250 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.68 47.0 4.95e-01 97.4% 83.1%
3240406 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.68 43.0 3.75e-01 98.7% 41.7%
3885049 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.67 44.0 4.94e-01 94.7% 92.7%
3786430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 41.0 4.73e-01 93.4% 94.0%
5018098 2.14.1.6 ↗ beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › DUF3006 0.66 38.0 3.87e-01 77.6% 57.3%
3550644 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 42.0 4.67e-01 100.0% 89.1%
3933539 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 47.0 5.02e-01 98.7% 89.2%
4200330 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.65 44.0 3.74e-01 100.0% 42.4%
4194385 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.64 38.0 4.17e-01 98.7% 74.6%
4025829 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 42.0 4.76e-01 96.1% 94.5%
4874733 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 41.0 4.68e-01 97.4% 94.4%
3304627 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.63 41.0 4.57e-01 94.7% 90.9%
4126578 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.63 38.0 4.18e-01 96.1% 76.3%
3934192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 44.0 4.78e-01 100.0% 95.0%
3942573 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 44.0 4.81e-01 100.0% 100.0%
4995669 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 50.0 5.06e-01 97.4% 97.3%
3398496 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.60 39.0 4.32e-01 98.7% 90.9%
3783160 4.1.1.308 ↗ beta barrels › SH3 › SH3 › SH3 › PF31073 0.59 42.0 4.49e-01 97.4% 89.2%
3897333 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 44.0 4.39e-01 97.4% 76.2%
3905176 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 44.0 4.66e-01 96.1% 92.3%
567 4.1.1.48 ↗ beta barrels › SH3 › SH3 › SH3 › DHFR_2 0.59 39.0 4.35e-01 96.1% 93.0%
3909202 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 45.0 4.63e-01 100.0% 88.6%
3900236 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 43.0 4.66e-01 97.4% 100.0%
3788021 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 45.0 4.57e-01 100.0% 85.3%
3253768 4.1.1.308 ↗ beta barrels › SH3 › SH3 › SH3 › PF31073 0.58 45.0 4.69e-01 98.7% 91.4%
3435006 4.1.1.308 ↗ beta barrels › SH3 › SH3 › SH3 › PF31073 0.58 42.0 4.43e-01 93.4% 89.2%
3850131 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 44.0 4.30e-01 100.0% 75.3%
3723101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.63e-01 96.1% 100.0%
3591824 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 43.0 4.42e-01 100.0% 90.0%
3698582 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 43.0 4.42e-01 100.0% 90.0%
3566631 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 44.0 4.37e-01 98.7% 81.2%
3629145 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 41.0 4.32e-01 100.0% 92.3%
3939408 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 40.0 4.27e-01 100.0% 92.3%
1095688 304.4.1.3 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII 0.56 49.0 4.55e-01 100.0% 94.9%
3482646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 43.0 3.23e-01 98.7% 32.5%
3218194 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 41.0 4.19e-01 100.0% 84.0%
3627275 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 40.0 4.30e-01 94.7% 100.0%
4939498 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.54 41.0 4.40e-01 94.7% 98.5%
3736953 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 41.0 4.40e-01 96.1% 100.0%
3980719 304.4.1.16 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ydhR 0.53 46.0 4.23e-01 100.0% 87.4%
3520216 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 41.0 4.22e-01 97.4% 95.7%
3576235 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 41.0 4.16e-01 98.7% 89.3%
166366 304.4.1.14 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb 0.52 45.0 4.21e-01 100.0% 96.9%
3704935 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 45.0 3.94e-01 100.0% 80.0%
3908789 4.1.1.354 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 0.51 43.0 2.97e-01 100.0% 25.6%
5006368 304.4.1.20 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg2 0.51 44.0 4.30e-01 100.0% 91.8%
4808079 304.12.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.51 44.0 4.03e-01 98.7% 92.4%
3215937 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 43.0 4.10e-01 94.7% 82.2%
5034097 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.51 44.0 4.25e-01 100.0% 97.6%
3554670 4.1.1.340 ↗ beta barrels › SH3 › SH3 › SH3 › PF28930 0.50 44.0 4.12e-01 100.0% 84.2%
5043432 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.50 41.0 3.90e-01 100.0% 76.7%
4989701 304.1.1.0 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain 0.50 44.0 3.80e-01 98.7% 94.2%