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KY612839.1__ARM71072.1__pVco5_084__00084
Bact-VirKY612839.1__ARM71072.1__pVco5_084__00084
Identity
- Accession:
- KY612839 ↗
- Kingdom:
- phage
Quality
72.8
mean pLDDT
Taxonomy
TaxID: 1965485
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-44
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8begA03 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.84 | 72.0 | 4.84e-01 | 100.0% | 31.5% |
| 1u2hA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 53.0 | 4.17e-01 | 100.0% | 44.8% |
| 6fezA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.65 | 54.0 | 4.21e-01 | 100.0% | 44.7% |
| 3rhtA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.64 | 47.0 | 2.88e-01 | 79.5% | 26.6% |
| 4lvnP00 | 3.30.70.2380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 53.0 | 4.26e-01 | 100.0% | 53.1% |
| 2mnjB00 | 2.60.40.4160 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 43.0 | 3.39e-01 | 74.4% | 51.1% |
| 6grrB01 | 3.30.457.10 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain | 0.62 | 50.0 | 3.96e-01 | 89.7% | 91.1% |
| 2xmjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 50.0 | 4.39e-01 | 100.0% | 60.3% |
| 1j71A02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.61 | 44.0 | 2.97e-01 | 76.9% | 66.5% |
| 2pe4A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 41.0 | 2.43e-01 | 82.1% | 14.1% |
| 5tuuA00 | 1.20.140.80 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Transcription factor DP | 0.58 | 43.0 | 3.02e-01 | 92.3% | 22.2% |
| 3ottB02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 41.0 | 2.45e-01 | 79.5% | 13.3% |
| 3qdhA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 44.0 | 3.40e-01 | 100.0% | 60.0% |
| 5upiA01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.57 | 47.0 | 3.15e-01 | 100.0% | 50.0% |
| 2jx8A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.57 | 33.0 | 3.17e-01 | 71.8% | 38.3% |
| 2bm0A03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.56 | 40.0 | 3.80e-01 | 82.1% | 78.4% |
| 7qzqA01 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.55 | 39.0 | 2.35e-01 | 76.9% | 14.7% |
| 3dsbA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 39.0 | 3.09e-01 | 82.1% | 97.0% |
| 3wqbA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 41.0 | 2.91e-01 | 100.0% | 64.5% |
| 2qrdE01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.54 | 38.0 | 2.59e-01 | 79.5% | 51.7% |
| 1pieA01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.53 | 40.0 | 2.71e-01 | 100.0% | 88.2% |
| 3venA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 40.0 | 2.68e-01 | 100.0% | 71.9% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.53 | 43.0 | 2.72e-01 | 100.0% | 19.7% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.52 | 35.0 | 3.16e-01 | 76.9% | 38.6% |
| 4l8nA03 | 3.30.160.670 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 38.0 | 2.71e-01 | 92.3% | 89.0% |
| 6lf2B01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 41.0 | 3.05e-01 | 100.0% | 91.9% |
| 6rwcA02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.51 | 38.0 | 3.81e-01 | 94.9% | 92.3% |
| 1zoyA04 | 4.10.80.40 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain | 0.51 | 34.0 | 2.97e-01 | 71.8% | 67.7% |
| 3wbiA04 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.50 | 36.0 | 2.76e-01 | 100.0% | 44.8% |
| 2iz4A02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.50 | 41.0 | 4.08e-01 | 100.0% | 92.9% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2983651 | 11.1.5.50 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › AgI_II_C2 | 0.84 | 72.0 | 4.79e-01 | 100.0% | 30.1% |
| 3610662 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.68 | 48.0 | 2.92e-01 | 74.4% | 24.9% |
| 3651311 | 1.1.1.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C | 0.67 | 48.0 | 3.21e-01 | 76.9% | 74.8% |
| 3510465 | 11.1.1.628 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sarcoglycan_2 | 0.67 | 53.0 | 4.35e-01 | 100.0% | 49.4% |
| 5078687 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 52.0 | 3.65e-01 | 100.0% | 30.7% |
| 3871207 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.62 | 42.0 | 2.44e-01 | 71.8% | 75.0% |
| 4937515 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.62 | 48.0 | 3.72e-01 | 87.2% | 92.2% |
| 3482313 | 10.1.1.10 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM | 0.61 | 43.0 | 2.77e-01 | 79.5% | 81.0% |
| 4314610 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.60 | 48.0 | 3.19e-01 | 100.0% | 48.9% |
| 3498865 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.59 | 51.0 | 3.03e-01 | 100.0% | 48.0% |
| 3232194 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.59 | 48.0 | 3.07e-01 | 97.4% | 20.0% |
| 3481348 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.59 | 48.0 | 3.63e-01 | 97.4% | 72.4% |
| 4048312 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.58 | 48.0 | 3.12e-01 | 100.0% | 43.1% |
| 3893045 | 391.1.1.5 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa | 0.58 | 38.0 | 3.62e-01 | 76.9% | 48.0% |
| 2085663 | 12.3.1.9 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_81 | 0.58 | 47.0 | 2.84e-01 | 100.0% | 26.0% |
| 3901882 | 207.2.1.35 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › DUF4097 | 0.57 | 44.0 | 2.72e-01 | 100.0% | 25.3% |
| 3797637 | 4291.1.1.0 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein | 0.55 | 42.0 | 2.47e-01 | 87.2% | 31.2% |
| 3923484 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.55 | 40.0 | 2.38e-01 | 84.6% | 25.0% |
| 3088296 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.55 | 42.0 | 2.84e-01 | 100.0% | 49.0% |
| 3480627 | 59.1.3.0 ↗ | beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains | 0.55 | 43.0 | 3.57e-01 | 94.9% | 90.0% |
| 4596350 | 109.4.1.362 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1,TPR_8 | 0.55 | 40.0 | 2.50e-01 | 79.5% | 16.6% |
| 3857827 | 109.4.1.2045 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_6 | 0.54 | 39.0 | 2.56e-01 | 79.5% | 19.5% |
| 4183108 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.54 | 42.0 | 2.90e-01 | 100.0% | 31.7% |
| 3180101 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 39.0 | 2.47e-01 | 79.5% | 16.7% |
| 3532833 | 389.1.1.1 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF | 0.54 | 38.0 | 3.20e-01 | 94.9% | 40.0% |
| 1548765 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.53 | 41.0 | 3.16e-01 | 87.2% | 49.0% |
| 3798429 | 10.7.1.0 ↗ | beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 | 0.53 | 38.0 | 3.06e-01 | 100.0% | 34.7% |
| 3258133 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 39.0 | 3.50e-01 | 100.0% | 64.3% |
| 5058672 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 38.0 | 3.52e-01 | 94.9% | 100.0% |
| 4113442 | 101.26.1.2 ↗ | alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › HTH_44 | 0.51 | 37.0 | 2.67e-01 | 76.9% | 19.3% |
| 2647435 | 391.1.2.2 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › PSP94 | 0.51 | 38.0 | 3.15e-01 | 94.9% | 42.9% |
| 3879757 | 391.1.2.2 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › PSP94 | 0.50 | 37.0 | 2.93e-01 | 84.6% | 34.4% |