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KY624616.1__ARM68884.1__X__00015

Bact-Vir

KY624616.1__ARM68884.1__X__00015

Identity

Accession:
KY624616 ↗
Kingdom:
phage

Quality

92.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-74
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ugjA02 1.10.8.750 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Phosphoribosylformylglycinamidine synthase, linker domain 0.74 59.0 6.00e-01 100.0% 88.7%
2be4A02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.74 61.0 5.23e-01 91.9% 69.3%
6fakA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.71 59.0 5.15e-01 93.5% 66.3%
2be4A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.69 55.0 4.96e-01 88.7% 84.1%
3nufB00 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.69 58.0 4.78e-01 93.5% 79.5%
1tj7A03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.68 52.0 5.05e-01 90.3% 74.6%
3uk6A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.66 56.0 5.07e-01 91.9% 78.3%
4mspB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.66 48.0 4.57e-01 79.0% 90.7%
2c9oB03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.66 56.0 5.06e-01 91.9% 78.3%
1dcnA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.66 51.0 4.93e-01 91.9% 75.0%
2f33A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.65 50.0 4.50e-01 85.5% 83.9%
1ls1A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.63 54.0 4.87e-01 98.4% 88.8%
3bosA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.63 48.0 4.73e-01 85.5% 76.1%
6cy5A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.63 55.0 4.95e-01 100.0% 78.7%
4ag6A02 1.10.8.730 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.63 51.0 4.33e-01 93.5% 73.6%
3besR03 6.10.140.1480 Special › Helix non-globular › Helix Hairpins › 0.62 42.0 4.39e-01 71.0% 91.1%
3b9qA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.62 54.0 4.84e-01 100.0% 75.3%
2dznF00 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 50.0 4.87e-01 90.3% 82.6%
1bg1A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 52.0 4.31e-01 100.0% 96.7%
5e37A02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.61 49.0 4.48e-01 90.3% 77.9%
1miwA04 1.10.246.80 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.61 49.0 4.87e-01 90.3% 87.5%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.60 48.0 4.41e-01 93.5% 77.3%
2daxA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.60 52.0 4.04e-01 100.0% 82.3%
1or7B01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.59 47.0 4.24e-01 93.5% 84.0%
2y1eA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.59 48.0 4.36e-01 93.5% 79.3%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.59 48.0 4.39e-01 93.5% 69.8%
6ofsA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.58 42.0 2.85e-01 75.8% 70.8%
2gf2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.57 39.0 3.04e-01 71.0% 67.2%
1nyaA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 49.0 3.62e-01 100.0% 56.2%
1j78A05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.57 44.0 4.48e-01 85.5% 100.0%
5h0pA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 50.0 4.25e-01 100.0% 72.5%
4f55A01 1.10.10.2520 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Cell wall hydrolase SleB, domain 1 0.56 42.0 3.96e-01 83.9% 65.0%
2x8xX02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.56 39.0 3.70e-01 95.2% 60.5%
3nrwA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.55 46.0 3.93e-01 95.2% 98.1%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.55 45.0 4.24e-01 93.5% 81.6%
3s5tA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.54 43.0 3.30e-01 88.7% 79.7%
2kmfA01 1.20.58.810 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 0.51 44.0 3.76e-01 96.8% 76.5%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.51 40.0 3.92e-01 88.7% 81.7%
4gbjC02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.50 39.0 3.12e-01 98.4% 40.7%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4959812 103.5.1.4 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.80 69.0 5.65e-01 100.0% 53.6%
4960805 103.5.1.0 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.79 67.0 6.86e-01 100.0% 96.7%
3802087 108.1.1.99 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.79 61.0 4.16e-01 80.6% 36.4%
4976228 103.5.1.0 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.79 67.0 5.85e-01 100.0% 63.3%
4105202 103.5.1.0 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.79 66.0 6.76e-01 98.4% 96.7%
4952657 103.5.1.4 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.79 65.0 6.66e-01 98.4% 95.0%
4993551 103.5.1.4 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.78 66.0 5.61e-01 100.0% 56.7%
5022861 103.5.1.4 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.78 65.0 6.33e-01 100.0% 82.9%
4965343 2002.1.1.25 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.78 66.0 3.98e-01 100.0% 14.7%
None 0.78 62.0 3.81e-01 95.2% 14.5%
5083934 103.5.1.0 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.77 64.0 6.55e-01 100.0% 95.0%
None 0.77 62.0 3.69e-01 96.8% 11.7%
4953164 103.5.1.0 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.77 62.0 6.56e-01 95.2% 100.0%
4388631 103.5.1.0 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.77 64.0 6.56e-01 98.4% 96.7%
4555788 103.5.1.4 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.77 60.0 6.29e-01 91.9% 96.4%
3911815 108.1.1.97 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.76 58.0 5.48e-01 82.3% 98.7%
4453145 103.5.1.0 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.76 60.0 6.34e-01 96.8% 100.0%
4445757 108.1.1.28 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.75 58.0 5.50e-01 83.9% 100.0%
4120356 103.5.1.4 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.75 62.0 5.38e-01 100.0% 58.0%
4110273 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.75 62.0 3.81e-01 98.4% 14.4%
4167763 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.75 62.0 3.80e-01 100.0% 14.7%
4975863 103.5.1.0 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.75 64.0 5.94e-01 96.8% 75.0%
3881263 108.1.1.98 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.75 57.0 4.94e-01 82.3% 78.9%
3597822 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.74 65.0 5.02e-01 100.0% 49.3%
3831850 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.74 65.0 3.80e-01 100.0% 12.4%
4299866 103.5.1.4 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.74 60.0 6.13e-01 98.4% 95.0%
4200901 103.5.1.4 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.74 62.0 5.21e-01 98.4% 55.2%
5016101 2002.1.1.25 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.73 65.0 3.94e-01 100.0% 15.7%
1154435 108.1.1.29 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.73 51.0 4.93e-01 74.2% 91.5%
4426551 103.5.1.0 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.73 57.0 6.03e-01 95.2% 98.2%
3714977 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.72 62.0 5.17e-01 100.0% 60.0%
3714508 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.72 59.0 5.36e-01 91.9% 83.5%
4411670 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.72 58.0 3.61e-01 98.4% 15.0%
3266319 108.1.1.73 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.72 53.0 4.43e-01 79.0% 77.1%
4461955 103.5.1.0 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.71 58.0 5.44e-01 98.4% 72.5%
3438142 108.1.1.73 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.71 58.0 4.59e-01 88.7% 62.4%
4032438 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.71 59.0 5.01e-01 91.9% 95.0%
3297020 108.1.1.99 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.70 53.0 4.50e-01 80.6% 75.0%
3804896 108.1.1.26 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.69 52.0 4.29e-01 82.3% 83.5%
4642199 108.1.1.26 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.69 51.0 4.78e-01 79.0% 92.0%
3449832 108.1.1.73 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.69 53.0 3.55e-01 83.9% 91.7%
5031192 4953.1.1.4 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.69 56.0 4.99e-01 93.5% 63.3%
3555794 108.1.1.73 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.68 50.0 4.55e-01 79.0% 81.2%
4017306 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.67 56.0 5.17e-01 93.5% 85.0%
3190824 166.1.1.0 alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C 0.67 56.0 5.27e-01 93.5% 90.7%
3313301 108.1.1.73 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.67 52.0 4.72e-01 85.5% 92.9%
3705956 108.1.1.73 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.66 53.0 4.62e-01 88.7% 85.3%
3269970 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.65 53.0 4.57e-01 93.5% 73.3%
5051792 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.64 51.0 4.46e-01 90.3% 63.0%
4224947 166.1.1.1 alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.63 51.0 4.41e-01 93.5% 67.6%
3253867 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.62 42.0 3.37e-01 71.0% 58.5%
3967043 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.62 52.0 4.66e-01 100.0% 77.9%
3898611 611.12.1.1 alpha bundles › N-cbl like › Izumo sperm-egg fusion protein 1 N-terminal domain › Izumo sperm-egg fusion protein 1 N-terminal domain › IZUMO 0.61 52.0 4.08e-01 95.2% 77.7%
3284850 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 47.0 4.41e-01 88.7% 76.2%
None 0.60 44.0 2.68e-01 77.4% 24.5%
5023341 4009.1.1.1 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.60 49.0 4.74e-01 93.5% 90.0%
3411651 7510.1.1.0 a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like 0.59 46.0 3.43e-01 88.7% 63.9%
3528821 108.1.1.96 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.59 48.0 4.25e-01 93.5% 81.1%
5011183 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.59 46.0 3.95e-01 90.3% 85.5%
3404120 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.59 41.0 3.25e-01 75.8% 32.4%
3863452 108.1.1.107 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7, EF-hand_8 0.59 48.0 4.38e-01 96.8% 84.4%
3505211 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.58 44.0 3.53e-01 85.5% 86.2%
5047500 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.58 43.0 3.07e-01 82.3% 70.0%
5002999 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.58 40.0 3.74e-01 72.6% 71.2%
3895123 108.1.1.73 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.58 48.0 4.35e-01 96.8% 84.4%
3879126 108.1.1.97 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.58 48.0 4.34e-01 96.8% 81.1%
3475867 148.1.3.17 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid 0.58 46.0 4.42e-01 91.9% 92.0%
3170010 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.55 45.0 2.93e-01 96.8% 32.5%
3642632 1008.1.1.4 alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › Mt_ATP_synt 0.54 48.0 3.89e-01 100.0% 52.5%
4284507 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.53 36.0 3.14e-01 72.6% 93.3%
1873688 191.1.1.33 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_31 0.51 45.0 3.72e-01 100.0% 78.3%
3953242 3883.1.1.1 alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.51 44.0 3.21e-01 100.0% 61.6%
3911935 632.26.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like 0.51 43.0 3.85e-01 96.8% 78.9%