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KY629563.1__ARK07475.1__LAV_00075__00075

Bact-Vir

KY629563.1__ARK07475.1__LAV_00075__00075

Identity

Accession:
KY629563 ↗
Kingdom:
phage

Quality

66.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 131-260
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26926.1 best Phage_T4_rIIB 72.7 4.20e-20 82.3% 23.2%
D2 high residues 384-428
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01527.27 best HTH_Tnp_1 29.1 1.30e-06 86.7% 50.7%
CATH (91)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5y9sC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.87 67.0 5.35e-01 100.0% 45.1%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 67.0 5.69e-01 100.0% 52.8%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 67.0 6.15e-01 100.0% 65.5%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 65.0 6.04e-01 100.0% 66.1%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 62.0 5.70e-01 77.8% 62.1%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 67.0 5.42e-01 100.0% 47.5%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.85 66.0 4.17e-01 100.0% 18.4%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 66.0 5.18e-01 100.0% 42.2%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 64.0 5.12e-01 100.0% 43.5%
4u7bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 62.0 6.63e-01 80.0% 97.4%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 65.0 5.64e-01 100.0% 56.7%
4pcqA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 62.0 5.99e-01 80.0% 76.0%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.82 64.0 4.51e-01 100.0% 29.0%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 64.0 5.34e-01 100.0% 50.7%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 60.0 4.56e-01 80.0% 36.2%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 63.0 5.63e-01 100.0% 60.3%
5fo5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 65.0 5.12e-01 100.0% 44.3%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 63.0 5.01e-01 100.0% 43.7%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 62.0 5.31e-01 84.4% 64.4%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.81 62.0 5.82e-01 84.4% 71.4%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 62.0 4.35e-01 84.4% 34.1%
2q0oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 61.0 5.40e-01 100.0% 56.7%
1k78A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 63.0 5.63e-01 88.9% 69.7%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 61.0 5.31e-01 100.0% 54.3%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 61.0 5.13e-01 100.0% 50.0%
2elhA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 62.0 5.40e-01 100.0% 57.6%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 63.0 5.66e-01 100.0% 63.9%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 62.0 5.55e-01 100.0% 60.9%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 62.0 5.09e-01 100.0% 48.8%
3szpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 60.0 4.82e-01 100.0% 42.7%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 62.0 4.87e-01 100.0% 41.9%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 60.0 5.71e-01 84.4% 72.2%
4jp0A03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 55.0 5.99e-01 77.8% 100.0%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 64.0 5.94e-01 100.0% 72.7%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 61.0 5.41e-01 100.0% 60.0%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 62.0 6.02e-01 100.0% 80.0%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.77 60.0 4.19e-01 100.0% 27.7%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 62.0 4.23e-01 100.0% 26.1%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 62.0 5.53e-01 100.0% 63.5%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 60.0 4.19e-01 100.0% 27.9%
2hr3D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 62.0 5.53e-01 100.0% 64.5%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 60.0 4.12e-01 100.0% 25.8%
1ulyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 60.0 4.77e-01 100.0% 43.8%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 60.0 6.00e-01 97.8% 88.9%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 62.0 5.87e-01 100.0% 75.9%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 61.0 4.24e-01 100.0% 28.6%
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 62.0 5.97e-01 93.3% 86.3%
2llkA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 56.0 5.79e-01 82.2% 97.6%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.75 61.0 4.41e-01 100.0% 32.5%
1xd7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 62.0 4.59e-01 100.0% 36.2%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 58.0 5.71e-01 100.0% 81.2%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 57.0 4.58e-01 86.7% 46.7%
2p5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 58.0 5.59e-01 100.0% 76.9%
2h09A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 66.0 5.64e-01 100.0% 63.4%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 63.0 5.91e-01 97.8% 90.9%
2pbxA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.73 56.0 3.68e-01 86.7% 28.9%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 61.0 4.34e-01 100.0% 32.6%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 59.0 5.26e-01 100.0% 64.1%
1jhgA00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.72 56.0 4.40e-01 88.9% 43.6%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.72 59.0 5.54e-01 93.3% 82.1%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 63.0 4.46e-01 100.0% 34.1%
1z05A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 60.0 5.19e-01 100.0% 59.7%
2p8tA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 56.0 4.81e-01 97.8% 53.3%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 55.0 4.31e-01 88.9% 70.2%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.70 63.0 4.92e-01 100.0% 51.1%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 61.0 5.35e-01 100.0% 66.7%
4krdB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.70 60.0 3.98e-01 100.0% 55.8%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 60.0 5.57e-01 100.0% 84.2%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 59.0 4.13e-01 100.0% 50.7%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 60.0 5.07e-01 100.0% 68.0%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 60.0 4.86e-01 100.0% 56.5%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.68 59.0 4.53e-01 100.0% 49.5%
3k69A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 57.0 3.98e-01 97.8% 30.0%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.68 57.0 3.59e-01 100.0% 18.0%
6az6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 58.0 4.87e-01 95.6% 64.0%
2qwtA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.67 56.0 3.79e-01 93.3% 33.5%
1ogyA03 3.40.228.10 Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2 0.67 58.0 3.56e-01 100.0% 54.5%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 4.81e-01 100.0% 63.6%
3f2gA00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.67 59.0 3.81e-01 100.0% 22.4%
4nvsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.66 56.0 3.87e-01 97.8% 54.2%
3mczA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 4.48e-01 100.0% 51.2%
2y75A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 56.0 4.13e-01 100.0% 37.6%
2qtqB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.66 48.0 3.22e-01 82.2% 25.9%
2hyjA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 54.0 5.42e-01 93.3% 97.8%
2rasA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.65 56.0 3.71e-01 100.0% 28.3%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 55.0 3.86e-01 100.0% 31.2%
2napA03 3.40.228.10 Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2 0.64 54.0 3.45e-01 100.0% 64.7%
2ao9I01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 47.0 3.92e-01 100.0% 47.1%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.59 49.0 3.57e-01 100.0% 38.9%
3f2bA08 1.10.150.870 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.54 43.0 3.22e-01 100.0% 35.8%
4ex6A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 41.0 3.85e-01 100.0% 77.6%
ECOD (94)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4404485 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.88 69.0 6.21e-01 100.0% 63.3%
3951084 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.87 68.0 5.78e-01 100.0% 54.3%
3972272 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.86 68.0 5.62e-01 100.0% 50.7%
3283074 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.86 68.0 5.38e-01 100.0% 44.7%
4976095 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.86 63.0 5.86e-01 77.8% 65.5%
3944331 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.86 68.0 5.48e-01 100.0% 47.5%
3974013 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.86 67.0 6.08e-01 100.0% 63.3%
4030763 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.86 67.0 5.88e-01 100.0% 58.5%
138024 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.86 67.0 5.78e-01 100.0% 55.9%
4260337 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.86 67.0 5.15e-01 100.0% 40.0%
3968151 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.86 67.0 5.34e-01 100.0% 44.7%
3290024 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.86 67.0 5.44e-01 100.0% 47.5%
3286659 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.85 67.0 5.70e-01 100.0% 54.3%
4314061 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.85 67.0 5.17e-01 100.0% 40.9%
3283527 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.85 67.0 5.43e-01 100.0% 47.5%
3890615 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.85 69.0 6.66e-01 95.6% 80.0%
3289034 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.85 66.0 5.87e-01 100.0% 60.3%
3975610 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.85 66.0 5.64e-01 100.0% 54.3%
4492035 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.85 66.0 5.64e-01 100.0% 54.3%
3962552 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.85 66.0 5.51e-01 100.0% 50.7%
4007717 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.85 67.0 5.40e-01 100.0% 47.5%
3942695 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.85 66.0 5.78e-01 100.0% 58.5%
3288310 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.84 66.0 5.63e-01 100.0% 54.3%
3968864 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.84 66.0 5.48e-01 100.0% 50.7%
3968604 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.84 66.0 5.17e-01 100.0% 42.7%
142817 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.84 66.0 5.56e-01 100.0% 52.8%
3288592 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.84 66.0 5.78e-01 100.0% 58.5%
4578719 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.84 65.0 5.81e-01 100.0% 60.3%
4245572 101.1.8.16 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › HTH_40 0.84 67.0 5.70e-01 100.0% 55.7%
4081344 101.1.6.12 alpha arrays › HTH › HTH › TrpR › HTH_23 0.83 59.0 6.51e-01 75.6% 100.0%
3287759 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.83 65.0 5.70e-01 100.0% 58.5%
4976803 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 65.0 5.11e-01 100.0% 42.7%
4955851 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.83 62.0 3.95e-01 80.0% 18.5%
3981688 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.83 65.0 5.71e-01 100.0% 58.5%
3980681 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.83 64.0 5.27e-01 100.0% 47.5%
3589184 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 64.0 5.36e-01 84.4% 53.3%
4937081 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 63.0 5.61e-01 100.0% 58.5%
4998155 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 65.0 6.28e-01 100.0% 78.0%
2759 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.81 63.0 5.56e-01 100.0% 58.5%
4501711 101.1.1.68 alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.81 66.0 5.65e-01 88.9% 62.9%
5072968 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 60.0 5.31e-01 80.0% 56.9%
4295835 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 65.0 6.51e-01 100.0% 86.7%
2761 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.81 63.0 5.01e-01 100.0% 43.7%
5052578 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.80 55.0 5.83e-01 73.3% 87.5%
3283589 101.1.1.368 alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.80 65.0 6.30e-01 91.1% 92.0%
3619451 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 64.0 5.68e-01 100.0% 61.5%
4031756 101.1.2.645 alpha arrays › HTH › HTH › winged helix domain › HTH_40 0.80 61.0 4.94e-01 100.0% 44.7%
5059633 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.79 61.0 5.75e-01 100.0% 69.1%
3741290 101.1.1.201 alpha arrays › HTH › HTH › Three-helical HTH › Bot1p 0.79 64.0 5.11e-01 91.1% 48.9%
4993585 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 59.0 5.39e-01 100.0% 61.7%
1177545 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.79 60.0 5.26e-01 100.0% 55.9%
4968186 101.1.6.12 alpha arrays › HTH › HTH › TrpR › HTH_23 0.79 54.0 5.45e-01 73.3% 75.6%
5024511 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 63.0 6.13e-01 91.1% 90.0%
5062774 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 61.0 4.12e-01 100.0% 23.6%
5043241 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 62.0 6.53e-01 95.6% 100.0%
3210747 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.78 63.0 6.34e-01 95.6% 91.1%
5054273 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 64.0 4.46e-01 100.0% 29.7%
3904156 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 64.0 6.42e-01 93.3% 95.6%
3962903 101.1.2.486 alpha arrays › HTH › HTH › winged helix domain › HTH_58 0.77 61.0 6.43e-01 100.0% 100.0%
4952035 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.77 63.0 5.77e-01 95.6% 70.0%
4385054 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 56.0 5.86e-01 95.6% 90.0%
3603167 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.76 63.0 5.63e-01 95.6% 64.6%
5066501 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.76 60.0 3.91e-01 100.0% 20.5%
4977807 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 62.0 5.57e-01 100.0% 64.6%
4990647 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 64.0 6.03e-01 100.0% 78.2%
3287232 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 61.0 5.13e-01 100.0% 53.3%
4010017 101.1.1.68 alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.76 64.0 5.56e-01 95.6% 64.3%
5044655 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.76 61.0 5.92e-01 100.0% 80.0%
3783362 2004.1.1.455 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 0.76 64.0 3.57e-01 100.0% 8.3%
4961280 101.1.2.939 alpha arrays › HTH › HTH › winged helix domain › PF26270 0.76 56.0 5.04e-01 82.2% 58.5%
4099721 101.1.3.24 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › PF27685 0.74 64.0 4.96e-01 100.0% 44.0%
3985435 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 54.0 5.65e-01 80.0% 90.0%
4939690 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.74 64.0 4.93e-01 97.8% 81.0%
4391758 101.1.6.1 alpha arrays › HTH › HTH › TrpR › Trp_repressor 0.74 57.0 4.52e-01 86.7% 46.3%
5030781 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 56.0 5.81e-01 100.0% 95.0%
4970108 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.73 62.0 6.01e-01 100.0% 86.0%
5060563 101.1.1.544 alpha arrays › HTH › HTH › Three-helical HTH › DUF1670 0.73 64.0 5.53e-01 100.0% 92.9%
3578615 101.1.1.302 alpha arrays › HTH › HTH › Three-helical HTH › FAM91_N 0.73 60.0 4.48e-01 100.0% 36.5%
5030780 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.72 60.0 5.82e-01 95.6% 84.0%
5063318 101.1.6.12 alpha arrays › HTH › HTH › TrpR › HTH_23 0.72 60.0 5.70e-01 95.6% 90.9%
5055780 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 54.0 5.65e-01 84.4% 100.0%
5074938 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 55.0 5.24e-01 97.8% 70.9%
4998605 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.71 62.0 4.66e-01 100.0% 57.3%
4391471 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.70 63.0 5.88e-01 100.0% 85.5%
3590374 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.70 59.0 5.58e-01 100.0% 78.2%
3826046 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.70 62.0 4.18e-01 100.0% 28.5%
5054427 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.69 59.0 4.13e-01 97.8% 66.2%
4997129 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.69 54.0 5.28e-01 100.0% 80.0%
5045218 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 59.0 4.50e-01 100.0% 41.9%
4142269 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.67 57.0 5.44e-01 100.0% 83.6%
5058409 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.67 58.0 4.72e-01 100.0% 51.8%
3987774 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 56.0 5.29e-01 97.8% 78.2%
4211867 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.67 53.0 4.11e-01 93.3% 69.1%
5038207 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 57.0 4.19e-01 100.0% 37.5%
D3 medium residues 2-111
PDB
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4npsA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 30.0 3.93e-01 88.2% 79.3%
2egtA01 6.20.50.50 Special › Other non-globular › N-terminal domain of TfIIb › 0.58 18.0 2.97e-01 85.5% 100.0%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 22.0 2.76e-01 87.3% 50.8%
1dq3A02 3.30.160.90 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 31.0 3.57e-01 78.2% 82.9%
3f8tA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 26.0 3.00e-01 87.3% 65.0%
1xovA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 25.0 2.94e-01 90.0% 63.9%
3mxnB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 29.0 2.75e-01 88.2% 45.0%
2rdgA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 28.0 3.31e-01 87.3% 81.7%
1bvsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 28.0 3.37e-01 88.2% 89.2%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5022892 220.1.1.82 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.60 27.0 3.59e-01 89.1% 80.0%
3589473 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 27.0 3.11e-01 88.2% 66.3%
4574142 180.1.1.1 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.52 36.0 2.82e-01 70.0% 63.5%