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KY629621.2__AQY55355.1__MS1_36__00036

Bact-Vir

KY629621.2__AQY55355.1__MS1_36__00036

Identity

Accession:
KY629621 ↗
Kingdom:
phage

Quality

94.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-55
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bnzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 48.0 3.62e-01 94.1% 41.4%
1jc4A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 46.0 3.52e-01 94.1% 41.4%
3hl8A02 3.30.1520.20 Alpha Beta › 2-Layer Sandwich › PX Domain › Exonuclease ExoI, domain 2 0.59 43.0 3.21e-01 78.4% 50.7%
1ntyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 3.54e-01 88.2% 64.5%
4wiqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 3.55e-01 86.3% 84.9%
1odhA01 2.20.25.670 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › GCM domain, large subdomain 0.55 41.0 3.83e-01 86.3% 74.6%
1cboA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 40.0 2.52e-01 86.3% 64.5%
8d40A03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.53 40.0 3.35e-01 86.3% 92.9%
3nv0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 38.0 2.70e-01 82.4% 57.7%
3t1oA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 37.0 2.62e-01 78.4% 97.9%
2laeA00 3.30.310.170 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Outer membrane protein assembly factor BamC 0.51 39.0 3.24e-01 96.1% 89.8%
1su0B00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.51 40.0 3.04e-01 100.0% 34.6%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3716207 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.62 49.0 3.08e-01 92.2% 18.1%
3305600 375.1.1.80 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Dof 0.62 38.0 4.17e-01 72.5% 77.5%
4173504 316.1.1.11 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GrpB 0.61 49.0 3.51e-01 94.1% 63.3%
3639475 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 51.0 3.72e-01 100.0% 65.8%
3386684 11.36.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Csd4 Ig-like domain › Csd4 Ig-like domain › Peptidase_M99_C 0.60 46.0 3.92e-01 92.2% 78.8%
5029528 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.59 48.0 3.54e-01 98.0% 47.5%
4032285 316.1.1.11 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GrpB 0.59 49.0 3.57e-01 100.0% 43.0%
3741882 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.59 43.0 2.67e-01 82.4% 14.4%
4385007 7579.1.1.41 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Esterase_PHB 0.58 44.0 2.82e-01 90.2% 40.0%
4020166 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.58 40.0 2.87e-01 72.5% 62.0%
3906579 213.1.1.6 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ 0.57 40.0 3.18e-01 78.4% 71.2%
3969473 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.57 48.0 3.46e-01 100.0% 43.0%
3916068 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.56 44.0 3.34e-01 96.1% 61.4%
3589730 4.1.1.252 beta barrels › SH3 › SH3 › SH3 › MdcG_N 0.55 38.0 3.49e-01 78.4% 71.2%
3223608 2004.1.1.534 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF30386 0.55 43.0 2.98e-01 96.1% 28.4%
3523734 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.55 42.0 3.46e-01 96.1% 76.5%
3968050 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.54 44.0 3.43e-01 94.1% 46.7%
3962989 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.53 40.0 3.33e-01 86.3% 95.0%
3888761 11.1.1.850 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28354 0.52 41.0 3.54e-01 98.0% 86.3%
3893985 11.1.1.850 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28354 0.52 39.0 3.28e-01 94.1% 76.5%
3505032 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 39.0 2.33e-01 84.3% 18.9%
5049906 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.52 39.0 3.80e-01 100.0% 75.0%
3937006 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 34.0 3.12e-01 70.6% 61.5%
4383595 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.37e-01 98.0% 98.3%
3607609 2008.6.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.51 37.0 2.53e-01 80.4% 20.9%
3517030 4.1.1.232 beta barrels › SH3 › SH3 › SH3 › SH3_Tf2-1 0.51 37.0 3.38e-01 80.4% 72.0%
3758042 389.1.2.1 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.51 36.0 3.17e-01 78.4% 48.8%
3617801 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 42.0 2.61e-01 100.0% 98.8%
3585016 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.50 35.0 3.48e-01 86.3% 70.0%
D2 medium residues 56-108
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.74 62.0 5.07e-01 96.2% 95.1%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.68 56.0 4.42e-01 96.2% 97.5%
4g1tA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.64 45.0 4.38e-01 75.5% 80.3%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.63 51.0 3.86e-01 100.0% 67.1%
2qf9A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.60 48.0 3.62e-01 98.1% 75.6%
3cqcB01 1.20.58.1380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 42.0 3.63e-01 75.5% 58.9%
3pe0A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 42.0 3.50e-01 75.5% 87.1%
3cwzB01 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.59 48.0 3.63e-01 98.1% 78.1%
1i6zA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.58 51.0 3.79e-01 100.0% 54.8%
1s5jA04 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.57 45.0 4.40e-01 100.0% 78.7%
2q12A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.57 49.0 3.16e-01 96.2% 21.9%
1grlB01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.56 42.0 2.88e-01 90.6% 97.5%
2db0B00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.56 42.0 2.81e-01 86.8% 53.3%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.56 40.0 3.24e-01 81.1% 82.9%
4c2uA04 1.10.486.10 Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 0.56 40.0 2.89e-01 79.2% 82.8%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 45.0 3.64e-01 98.1% 46.5%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.55 42.0 3.56e-01 94.3% 96.4%
5y6qB02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.55 41.0 3.54e-01 92.5% 96.2%
1fioA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 47.0 3.23e-01 100.0% 44.2%
1vw4T01 6.10.330.20 Special › Helix non-globular › Monooxygenase › 0.54 46.0 3.62e-01 96.2% 49.1%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.54 46.0 4.49e-01 100.0% 96.7%
1k90B03 1.20.140.60 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.54 45.0 3.61e-01 100.0% 68.7%
4zvaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 42.0 3.27e-01 100.0% 93.3%
1h7cA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 45.0 3.68e-01 98.1% 51.5%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.53 43.0 4.49e-01 98.1% 100.0%
4azcA02 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.53 37.0 3.63e-01 90.6% 69.5%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.53 43.0 3.78e-01 96.2% 59.8%
3t69A02 3.30.420.310 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain 0.52 43.0 2.93e-01 100.0% 46.0%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 43.0 4.10e-01 92.5% 90.3%
3besR03 6.10.140.1480 Special › Helix non-globular › Helix Hairpins › 0.52 36.0 3.56e-01 71.7% 89.3%
5hmlA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.52 42.0 3.81e-01 100.0% 71.2%
1vctA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.51 44.0 3.54e-01 100.0% 67.0%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.51 44.0 4.30e-01 96.2% 91.4%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.51 43.0 3.86e-01 98.1% 77.2%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.51 42.0 4.05e-01 98.1% 83.6%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.51 42.0 3.83e-01 98.1% 67.5%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.50 43.0 3.45e-01 100.0% 81.2%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5072044 213.1.1.17 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF1122 0.72 53.0 3.50e-01 81.1% 40.9%
3170239 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.69 50.0 4.24e-01 79.2% 82.2%
4965518 3636.1.1.0 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.66 50.0 4.14e-01 86.8% 69.5%
3573712 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 46.0 2.88e-01 100.0% 14.8%
3485540 603.1.1.1 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.60 43.0 3.05e-01 77.4% 58.3%
4180990 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 47.0 4.23e-01 98.1% 95.0%
3736598 109.4.1.522 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RPAP1_C 0.57 42.0 2.97e-01 83.0% 61.1%
3389963 1134.1.1.0 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.57 44.0 4.10e-01 98.1% 65.7%
4964664 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.57 49.0 4.60e-01 98.1% 81.5%
4960850 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.56 48.0 4.67e-01 96.2% 88.3%
3563618 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.56 46.0 3.77e-01 100.0% 69.1%
3493417 4163.1.1.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.55 48.0 3.41e-01 98.1% 33.8%
3732192 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.55 47.0 4.20e-01 96.2% 89.3%
3982421 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.54 46.0 4.11e-01 96.2% 70.7%
4010395 622.4.1.26 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › HisKA 0.54 46.0 4.20e-01 96.2% 75.7%
3731364 3922.1.1.137 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › HisKA 0.54 45.0 4.29e-01 96.2% 81.5%
3410128 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.54 46.0 4.35e-01 98.1% 98.5%
3607086 4992.1.1.0 extended segments › RelB-like › RelB-like › RelB-like 0.54 45.0 4.00e-01 98.1% 80.0%
3968489 3978.1.1.0 alpha complex topology › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase 0.54 47.0 2.81e-01 100.0% 27.5%
3534511 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.54 44.0 3.26e-01 100.0% 45.6%
3473984 603.1.1.97 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin, SNARE 0.53 47.0 3.00e-01 100.0% 52.5%
4385616 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.53 46.0 3.51e-01 96.2% 47.5%
3195418 192.8.1.376 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › RRP36 0.53 45.0 3.81e-01 100.0% 56.8%
3294656 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.53 43.0 2.62e-01 96.2% 99.7%
4980072 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 43.0 3.20e-01 100.0% 36.1%
5011909 5069.1.3.136 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › MS_channel_1st 0.52 42.0 3.19e-01 88.7% 69.2%
3573559 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.52 44.0 3.40e-01 96.2% 56.7%
3586228 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.52 44.0 3.66e-01 100.0% 75.0%
3837777 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.51 45.0 3.63e-01 100.0% 73.3%
3682600 109.4.1.359 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo70_C 0.51 42.0 2.85e-01 96.2% 29.8%
3704 601.1.1.1 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.51 42.0 3.92e-01 98.1% 77.8%