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KY653118.1__ARM67923.1__X__00036
Bact-VirKY653118.1__ARM67923.1__X__00036
Identity
- Accession:
- KY653118 ↗
- Kingdom:
- phage
Quality
86.7
mean pLDDT
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-63
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w3sB03 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.69 | 46.0 | 4.04e-01 | 100.0% | 45.7% |
| 1vkpB00 | 3.75.10.10 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A | 0.69 | 48.0 | 2.96e-01 | 100.0% | 12.7% |
| 3t7zA00 | 3.30.420.220 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.63 | 47.0 | 3.81e-01 | 80.6% | 58.8% |
| 1mjgM05 | 3.40.1470.10 | Alpha Beta › 3-Layer(aba) Sandwich › Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5 › Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5 | 0.60 | 51.0 | 4.10e-01 | 100.0% | 58.5% |
| 1g19A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 48.0 | 3.35e-01 | 91.9% | 68.8% |
| 3ndcA01 | 3.40.1010.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain | 0.55 | 43.0 | 3.70e-01 | 91.9% | 59.3% |
| 1z2lA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.55 | 38.0 | 2.49e-01 | 72.6% | 77.7% |
| 3u40D00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.54 | 45.0 | 3.15e-01 | 98.4% | 81.3% |
| 1iv0A00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.54 | 41.0 | 3.66e-01 | 87.1% | 72.4% |
| 4c6rA00 | 3.40.50.10140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain | 0.54 | 38.0 | 2.92e-01 | 75.8% | 96.3% |
| 4c5eC02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 42.0 | 3.72e-01 | 90.3% | 65.6% |
| 6edhA00 | 3.60.130.10 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like | 0.53 | 39.0 | 2.56e-01 | 100.0% | 17.8% |
| 4ar9A01 | 3.40.30.160 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Collagenase ColT, N-terminal domain | 0.53 | 37.0 | 2.91e-01 | 72.6% | 74.6% |
| 3kk7A03 | 3.30.160.840 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 41.0 | 4.14e-01 | 90.3% | 87.1% |
| 1wotA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.51 | 44.0 | 3.86e-01 | 100.0% | 64.3% |
| 1m0wA04 | 3.40.50.1760 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic | 0.51 | 39.0 | 3.30e-01 | 93.5% | 71.3% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4966853 | 375.1.1.324 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF1922 | 0.69 | 53.0 | 4.86e-01 | 83.9% | 93.8% |
| 3605866 | 2003.1.5.156 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_31 | 0.63 | 49.0 | 3.02e-01 | 90.3% | 26.4% |
| None | — | 0.62 | 48.0 | 2.98e-01 | 90.3% | 25.7% | |
| 3496147 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.62 | 50.0 | 4.32e-01 | 91.9% | 98.0% |
| 3582540 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.61 | 46.0 | 4.10e-01 | 88.7% | 97.1% |
| 4167187 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.60 | 41.0 | 4.31e-01 | 90.3% | 80.0% |
| 4955280 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.60 | 42.0 | 4.06e-01 | 95.2% | 65.7% |
| 5003130 | 213.5.1.1 ↗ | a+b three layers › Nat/Ivy › AlkZ C-terminal domain › AlkZ C-terminal domain › AlkZ-like | 0.59 | 43.0 | 3.75e-01 | 90.3% | 50.5% |
| 3945726 | 7572.1.1.1 ↗ | a/b three-layered sandwiches › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain › PFK | 0.59 | 48.0 | 3.89e-01 | 91.9% | 83.2% |
| 4933349 | 2007.2.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like | 0.59 | 42.0 | 3.96e-01 | 77.4% | 96.2% |
| 4418754 | 7572.1.1.1 ↗ | a/b three-layered sandwiches › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain › PFK | 0.59 | 47.0 | 3.75e-01 | 91.9% | 78.4% |
| 3596695 | 327.10.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related | 0.57 | 42.0 | 3.98e-01 | 100.0% | 65.3% |
| 3263004 | 2012.1.1.2 ↗ | a/b three-layered sandwiches › LigB-like › LigB-like › LigB-like › LigB | 0.55 | 40.0 | 2.76e-01 | 83.9% | 94.4% |
| 4933311 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.53 | 45.0 | 3.44e-01 | 100.0% | 40.0% |
| 3594044 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 42.0 | 3.17e-01 | 93.5% | 37.1% |
| 4933112 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.52 | 44.0 | 3.49e-01 | 100.0% | 44.4% |
| 4960117 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.52 | 44.0 | 3.92e-01 | 100.0% | 65.6% |
| 2041630 | 1152.1.1.1 ↗ | a+b three layers › a+b domain in conserved hypothetical protein Rv3899c › a+b domain in conserved hypothetical protein Rv3899c › a+b domain in conserved hypothetical protein Rv3899c › DUF5632 | 0.51 | 37.0 | 3.25e-01 | 85.5% | 71.1% |
| 3701910 | 327.10.1.12 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › PSP1 | 0.51 | 44.0 | 4.01e-01 | 98.4% | 71.8% |
| 5029313 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.51 | 41.0 | 3.59e-01 | 100.0% | 58.0% |
| 4019630 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.50 | 41.0 | 3.36e-01 | 100.0% | 76.3% |