Back to structures

KY653118.1__ARM67939.1__X__00052

Bact-Vir

KY653118.1__ARM67939.1__X__00052

Identity

Accession:
KY653118 ↗
Kingdom:
phage

Quality

82.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-62
PDB
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xwrC00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.83 71.0 6.45e-01 94.7% 72.4%
6oi7A01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.76 64.0 4.35e-01 100.0% 27.0%
1evyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.75 56.0 4.14e-01 100.0% 31.5%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.73 52.0 3.88e-01 93.0% 32.1%
3bg2A01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.69 58.0 4.04e-01 100.0% 28.0%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 53.0 4.35e-01 84.2% 47.7%
3vw7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.67 59.0 3.76e-01 100.0% 20.2%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.67 56.0 4.97e-01 100.0% 64.7%
1owaA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 55.0 4.45e-01 91.2% 50.0%
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.66 57.0 4.10e-01 100.0% 34.5%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.65 53.0 4.69e-01 91.2% 60.5%
1jb0F00 1.10.8.110 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Photosystem I, reaction centre, subunit PsaF 0.64 53.0 3.98e-01 100.0% 36.9%
2dw4A03 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.64 53.0 4.39e-01 91.2% 65.3%
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.64 52.0 4.25e-01 91.2% 48.6%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 46.0 3.89e-01 77.2% 61.7%
2ke4A00 6.10.140.470 Special › Helix non-globular › Helix Hairpins › 0.63 51.0 4.34e-01 91.2% 55.1%
2pmsC00 6.10.140.920 Special › Helix non-globular › Helix Hairpins › 0.63 52.0 4.21e-01 91.2% 47.7%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.63 51.0 3.89e-01 86.0% 90.2%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.63 55.0 3.55e-01 98.2% 22.1%
5nx5B00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.63 52.0 3.32e-01 91.2% 24.3%
2optA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 51.0 3.87e-01 93.0% 93.1%
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.62 55.0 3.90e-01 100.0% 73.3%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.62 51.0 4.94e-01 91.2% 81.2%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.62 52.0 5.16e-01 93.0% 90.0%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.26e-01 78.9% 72.2%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.61 49.0 4.02e-01 91.2% 47.3%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.60 50.0 4.77e-01 93.0% 85.1%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.60 50.0 4.76e-01 91.2% 78.8%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.60 46.0 4.63e-01 89.5% 86.2%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.46e-01 80.7% 83.3%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.59 49.0 4.73e-01 93.0% 87.5%
6wv5A01 1.20.1440.130 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain 0.59 51.0 3.90e-01 98.2% 91.2%
2hxoA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 47.0 3.71e-01 98.2% 55.6%
5i1uA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.58 50.0 3.20e-01 98.2% 40.3%
4ysxC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.58 47.0 3.66e-01 100.0% 43.1%
2fjrA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 46.0 4.21e-01 87.7% 86.8%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 4.56e-01 91.2% 93.8%
1pixA03 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.53 44.0 2.86e-01 100.0% 19.7%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2786 101.1.4.6 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Phage_CII 0.94 84.0 7.40e-01 94.7% 70.5%
3976541 101.1.4.6 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Phage_CII 0.87 76.0 7.00e-01 93.0% 75.7%
4026843 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.72 59.0 5.57e-01 100.0% 75.7%
5063535 5058.1.1.16 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.71 64.0 5.68e-01 100.0% 78.8%
3735470 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 51.0 4.94e-01 77.2% 73.8%
3941044 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.70 62.0 3.92e-01 100.0% 19.7%
3944446 5069.1.3.1 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt 0.70 61.0 5.40e-01 100.0% 67.1%
3590854 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.68 56.0 4.71e-01 91.2% 56.8%
4945888 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.68 55.0 4.96e-01 91.2% 65.0%
3698701 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 46.0 4.44e-01 71.9% 61.5%
3397171 192.5.1.0 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.67 55.0 5.33e-01 91.2% 84.6%
3961597 7579.1.1.62 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_8 0.66 56.0 3.44e-01 94.7% 26.2%
3489764 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.66 54.0 4.43e-01 91.2% 60.0%
4357473 314.1.1.2 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.66 59.0 3.55e-01 100.0% 20.5%
3323416 3831.1.1.7 alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › DUF842 0.66 49.0 4.05e-01 98.2% 43.8%
3598408 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 45.0 4.11e-01 71.9% 53.3%
4304756 605.2.1.3 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N 0.65 54.0 4.31e-01 89.5% 53.6%
4385365 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.65 51.0 4.08e-01 84.2% 43.6%
4110549 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.65 53.0 4.27e-01 89.5% 53.6%
4216342 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.65 48.0 4.50e-01 87.7% 64.0%
4057547 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.64 53.0 4.23e-01 89.5% 53.6%
4273807 314.1.1.0 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.64 53.0 3.14e-01 91.2% 11.8%
4043484 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.64 52.0 4.24e-01 91.2% 47.3%
4242072 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.64 51.0 4.15e-01 91.2% 57.4%
3497897 3939.1.1.0 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.64 52.0 4.90e-01 89.5% 84.3%
4424778 605.2.1.3 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N 0.64 52.0 4.21e-01 89.5% 53.6%
3273831 141.1.1.8 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 0.64 53.0 3.27e-01 91.2% 15.9%
4320306 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.64 52.0 4.19e-01 89.5% 53.6%
4312332 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.64 53.0 4.69e-01 93.0% 64.7%
4359654 605.2.1.3 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N 0.64 53.0 4.24e-01 91.2% 53.6%
4654983 605.2.1.3 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N 0.63 52.0 4.19e-01 91.2% 47.3%
4175087 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.63 52.0 4.20e-01 91.2% 47.3%
5074821 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.63 53.0 4.05e-01 100.0% 39.3%
4555586 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.63 51.0 4.21e-01 91.2% 49.5%
3987846 2002.1.1.50 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › F_bP_aldolase 0.63 54.0 3.47e-01 100.0% 25.3%
3653791 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.63 48.0 4.43e-01 84.2% 70.7%
5056476 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.63 55.0 5.08e-01 100.0% 77.3%
4120406 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.63 51.0 4.15e-01 91.2% 47.3%
3934928 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.62 50.0 4.30e-01 91.2% 54.7%
4429833 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.62 53.0 4.22e-01 93.0% 53.6%
4231284 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.62 51.0 4.15e-01 91.2% 47.3%
3971056 601.33.1.1 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD 0.62 49.0 3.84e-01 87.7% 40.8%
5025813 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.62 50.0 4.07e-01 91.2% 47.3%
4362754 5086.1.1.86 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_YBHG 0.62 51.0 4.06e-01 93.0% 45.8%
3839273 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.62 51.0 4.10e-01 91.2% 47.3%
5048093 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.62 49.0 4.05e-01 91.2% 47.3%
4937169 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.62 50.0 4.06e-01 91.2% 47.3%
3741234 605.2.1.3 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N 0.61 49.0 3.97e-01 91.2% 45.2%
4263341 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.60 48.0 3.91e-01 91.2% 45.2%
4134991 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.60 47.0 3.82e-01 82.5% 69.0%
5027469 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.60 50.0 2.96e-01 93.0% 20.8%
3241745 192.29.1.172 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PF29678 0.60 50.0 3.65e-01 91.2% 35.5%
4470267 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.60 48.0 3.96e-01 91.2% 47.3%
366729 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.60 45.0 3.97e-01 93.0% 51.5%
5074758 164.1.1.0 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.59 46.0 4.08e-01 84.2% 85.0%
3176852 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.58 47.0 3.65e-01 91.2% 40.8%
4948274 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.58 46.0 4.27e-01 93.0% 70.7%
3603891 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.56 43.0 3.81e-01 89.5% 59.6%
4932440 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.55 42.0 3.87e-01 93.0% 61.2%
4246296 3826.1.1.72 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Microcin 0.55 47.0 3.92e-01 100.0% 55.2%