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KY653118.1__ARM67943.1__X__00056

Bact-Vir

KY653118.1__ARM67943.1__X__00056

Identity

Accession:
KY653118 ↗
Kingdom:
phage

Quality

95.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-62
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.92 79.0 7.91e-01 96.8% 90.3%
3a1yA00 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.87 52.0 5.44e-01 79.0% 65.5%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 52.0 5.37e-01 96.8% 78.9%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 57.0 5.26e-01 95.2% 65.4%
1w9rA00 1.20.58.440 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › choline binding protein A 0.69 48.0 3.84e-01 95.2% 37.8%
6orkA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.68 45.0 2.96e-01 77.4% 17.1%
1knzA01 6.10.280.20 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain 0.68 52.0 4.46e-01 83.9% 56.9%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.68 50.0 5.35e-01 95.2% 92.3%
2rasA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.68 53.0 3.69e-01 83.9% 27.2%
4aifA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.68 49.0 3.65e-01 75.8% 41.0%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 50.0 4.56e-01 83.9% 85.1%
2klqA00 1.20.58.870 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 58.0 4.78e-01 100.0% 57.0%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.66 49.0 4.55e-01 77.4% 76.0%
2rpaA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.66 49.0 4.56e-01 79.0% 75.3%
2lpnA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.65 53.0 4.56e-01 93.5% 61.9%
4lctB00 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.65 45.0 2.82e-01 74.2% 20.4%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 42.0 3.78e-01 93.5% 49.4%
2vy1A00 1.10.4180.10 Mainly Alpha › Orthogonal Bundle › Protein LEAFY › Protein LEAFY 0.64 57.0 4.21e-01 100.0% 74.8%
4jd9G00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.64 53.0 4.26e-01 96.8% 46.7%
5l3wA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.64 44.0 3.93e-01 82.3% 52.4%
6rv2A00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 56.0 3.72e-01 98.4% 47.6%
1owlA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 53.0 4.14e-01 90.3% 46.3%
2f48A03 1.10.10.480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphofructokinase; domain 3 0.61 47.0 4.54e-01 91.9% 73.3%
1gnlA01 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.61 52.0 3.96e-01 91.9% 67.6%
4gpkF02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 49.0 3.29e-01 90.3% 48.8%
3fmsA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.60 52.0 4.01e-01 98.4% 61.7%
2m4eA00 1.20.120.1930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family 0.59 48.0 4.34e-01 90.3% 73.3%
1go3F02 6.10.140.10 Special › Helix non-globular › Helix Hairpins › 0.59 34.0 3.79e-01 74.2% 74.5%
2bbwA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 49.0 3.44e-01 98.4% 35.0%
4bwrA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 41.0 2.46e-01 74.2% 10.1%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.57 46.0 4.04e-01 93.5% 60.0%
4akgA13 1.10.8.740 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 43.0 3.89e-01 82.3% 63.5%
4p63D00 3.40.910.10 Alpha Beta › 3-Layer(aba) Sandwich › Deoxyhypusine Synthase › Deoxyhypusine synthase 0.57 48.0 3.12e-01 100.0% 30.1%
2or0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 47.0 3.32e-01 90.3% 52.7%
6z4xA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 50.0 3.70e-01 100.0% 82.6%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 44.0 4.11e-01 93.5% 72.8%
2dsjA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.54 40.0 3.90e-01 85.5% 73.1%
1w98B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 45.0 3.64e-01 90.3% 50.9%
1orjD00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.53 48.0 3.81e-01 100.0% 80.0%
1uouA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.53 39.0 3.83e-01 85.5% 72.1%
2elcA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.51 35.0 3.50e-01 74.2% 70.1%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.51 46.0 4.00e-01 100.0% 82.8%
3h5qA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.51 37.0 3.59e-01 85.5% 70.0%
4ga4A01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.50 37.0 3.61e-01 85.5% 73.1%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4006612 639.2.1.1 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › YmgB 0.93 80.0 7.04e-01 93.5% 65.9%
4010412 639.2.1.0 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.92 77.0 8.15e-01 88.7% 100.0%
4009408 639.2.1.1 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › YmgB 0.92 77.0 7.48e-01 88.7% 80.9%
3943035 639.2.1.0 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.90 82.0 8.09e-01 98.4% 93.8%
4374802 639.2.1.2 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › DUF2767 0.90 79.0 7.83e-01 95.2% 95.4%
4009124 639.2.1.5 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › PF27475 0.88 77.0 7.82e-01 93.5% 95.0%
3948672 639.2.1.1 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › YmgB 0.87 71.0 7.55e-01 87.1% 98.2%
3986794 639.2.1.1 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › YmgB 0.86 70.0 6.71e-01 87.1% 77.1%
3977558 639.2.1.3 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › BDM 0.85 67.0 7.09e-01 87.1% 96.4%
3609397 109.4.1.509 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRP12_HEAT 0.84 73.0 3.95e-01 100.0% 5.8%
5011282 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.82 67.0 4.06e-01 88.7% 17.9%
4009705 639.2.1.0 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.81 69.0 7.02e-01 91.9% 95.0%
3600108 109.4.1.509 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRP12_HEAT 0.80 73.0 3.92e-01 100.0% 5.8%
3602860 109.61.1.1 alpha superhelices › Repetitive alpha hairpins › Uncharacterized protein PF2048.1 › Uncharacterized protein PF2048.1 › MJ1579 0.78 58.0 5.60e-01 91.9% 70.0%
3709854 639.2.1.0 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.78 56.0 5.91e-01 83.9% 83.6%
3608246 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.77 52.0 5.56e-01 77.4% 78.2%
3792916 639.2.1.0 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.77 64.0 6.01e-01 90.3% 81.3%
3591325 4336.2.1.0 alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 0.77 55.0 4.71e-01 87.1% 48.0%
3405290 4207.1.2.82 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › PF27645 0.75 62.0 4.80e-01 91.9% 43.2%
3428642 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.73 55.0 5.80e-01 88.7% 92.7%
4933335 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.73 54.0 4.88e-01 77.4% 71.2%
3884438 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.73 54.0 4.87e-01 77.4% 71.2%
3480265 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.72 53.0 4.84e-01 77.4% 71.2%
3743018 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.72 53.0 5.27e-01 77.4% 87.7%
3313062 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.72 55.0 5.19e-01 98.4% 69.3%
3261028 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.71 58.0 5.30e-01 96.8% 68.2%
3286911 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 58.0 5.57e-01 95.2% 78.6%
3770100 604.12.1.8 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › KATNA1_MIT 0.70 52.0 4.51e-01 77.4% 63.3%
4983638 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.70 53.0 5.12e-01 83.9% 71.0%
5024001 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.70 52.0 4.31e-01 77.4% 65.0%
3713190 4336.2.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › EnY2 0.70 50.0 4.34e-01 82.3% 49.5%
3773235 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.70 52.0 4.56e-01 79.0% 64.4%
3798489 164.1.1.0 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.68 61.0 5.06e-01 100.0% 64.5%
3608416 4336.2.1.0 alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 0.68 52.0 4.69e-01 87.1% 60.0%
4994575 164.1.1.0 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.67 60.0 5.26e-01 100.0% 73.3%
4024570 604.12.1.2 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.65 45.0 3.94e-01 82.3% 47.4%
3255275 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 48.0 4.86e-01 93.5% 81.7%
3736274 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 52.0 4.81e-01 93.5% 75.3%
3306414 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.64 48.0 3.84e-01 98.4% 42.6%
4047429 3281.1.1.3 alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N,Proton_antipo_C 0.64 57.0 3.25e-01 100.0% 16.2%
3599948 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 49.0 3.31e-01 83.9% 37.4%
3329178 4953.1.1.24 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › Tim17 0.64 56.0 5.18e-01 100.0% 82.5%
4569058 105.1.1.8 alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › Kri1 0.63 56.0 4.49e-01 98.4% 71.7%
5024597 3962.1.1.0 alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit 0.63 56.0 4.27e-01 100.0% 57.2%
3843639 101.6.1.1 alpha arrays › HTH › Protein serine/threonine phosphatase 2C-C › Protein serine/threonine phosphatase 2C-C › PP2C_C 0.63 54.0 5.15e-01 100.0% 84.0%
3828011 109.4.1.1271 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.62 49.0 3.52e-01 96.8% 29.2%
4947959 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 52.0 3.69e-01 93.5% 77.1%
3174920 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.59 44.0 4.05e-01 82.3% 65.9%
3234731 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.59 44.0 4.44e-01 98.4% 81.5%
3729854 109.49.1.1 alpha superhelices › Repetitive alpha hairpins › Helical domain in acetyl-CoA carboxylase › Helical domain in acetyl-CoA carboxylase › ACC_central 0.58 45.0 3.02e-01 87.1% 23.1%
5062157 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.58 48.0 4.60e-01 88.7% 78.6%
3744738 1016.1.1.3 alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › PF26434 0.57 43.0 3.74e-01 79.0% 82.2%
4468319 563.1.1.1 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.57 50.0 3.80e-01 100.0% 41.3%
3354215 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.57 42.0 2.73e-01 79.0% 30.2%
4954909 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.57 48.0 4.27e-01 90.3% 75.3%
5051498 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.56 49.0 4.39e-01 100.0% 75.6%
3566066 198.1.1.8 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapA+SapB_2+SapB_1 0.55 46.0 3.22e-01 98.4% 35.9%
3692409 4336.2.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › EnY2 0.55 41.0 3.68e-01 85.5% 56.7%
3734030 109.4.1.1135 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_RPO41_N 0.54 48.0 3.22e-01 98.4% 44.0%
5034435 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.54 49.0 4.45e-01 100.0% 86.3%
5005176 604.15.1.0 alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like 0.53 46.0 4.60e-01 100.0% 90.8%
3913629 184.1.1.1 alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.52 38.0 3.51e-01 85.5% 61.3%