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KY653124.1__ARM68216.1__X__00024

Bact-Vir

KY653124.1__ARM68216.1__X__00024

Identity

Accession:
KY653124 ↗
Kingdom:
phage

Quality

90.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_IME1367_01

TaxID: 1965491

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-71
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.66 46.0 3.62e-01 73.1% 45.7%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 46.0 3.08e-01 74.6% 33.6%
2ea9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 43.0 3.94e-01 71.6% 53.2%
2qcuB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 45.0 3.13e-01 76.1% 41.5%
5hy7B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 53.0 3.39e-01 92.5% 36.0%
2r0cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 44.0 2.96e-01 74.6% 29.8%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.62 42.0 3.75e-01 70.1% 72.6%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.60 43.0 3.39e-01 77.6% 97.4%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.60 37.0 3.72e-01 74.6% 61.2%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.59 41.0 3.37e-01 71.6% 43.5%
1o9aA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.59 34.0 3.89e-01 73.1% 84.1%
1i3pA00 2.60.250.10 Mainly Beta › Sandwich › Baculovirus p35 › Baculovirus p35 0.59 40.0 2.58e-01 70.1% 44.9%
3a32A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.58 49.0 3.90e-01 95.5% 59.6%
1v6zA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.58 41.0 4.22e-01 76.1% 80.0%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.56 40.0 3.21e-01 74.6% 59.3%
4blqA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 40.0 2.78e-01 79.1% 62.5%
2dmwA01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.55 36.0 3.03e-01 74.6% 37.1%
2oaiA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.55 38.0 3.58e-01 73.1% 60.0%
1b63A01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 45.0 3.27e-01 97.0% 59.7%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 39.0 2.38e-01 74.6% 21.5%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 44.0 3.51e-01 94.0% 64.8%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 2.96e-01 100.0% 45.5%
2oap101 3.30.450.380 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 36.0 2.57e-01 73.1% 63.1%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.51 36.0 3.01e-01 74.6% 64.5%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.51 35.0 3.29e-01 71.6% 85.7%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.51 35.0 3.30e-01 74.6% 73.0%
2v73A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 38.0 2.93e-01 86.6% 84.2%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.50 38.0 3.32e-01 79.1% 71.0%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 43.0 2.84e-01 95.5% 97.7%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 43.0 2.78e-01 100.0% 47.1%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3998976 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.71 40.0 4.72e-01 73.1% 82.2%
3223489 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.68 45.0 3.58e-01 74.6% 34.6%
5052753 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.67 43.0 3.17e-01 73.1% 26.9%
3196528 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.66 45.0 4.77e-01 71.6% 83.3%
3387446 7579.1.1.60 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF2920 0.66 46.0 2.80e-01 73.1% 51.1%
5016233 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 46.0 3.91e-01 74.6% 45.4%
5077119 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 44.0 3.39e-01 73.1% 31.3%
3698579 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.64 44.0 3.72e-01 71.6% 48.2%
3986751 3197.1.1.0 ↗ a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 0.63 44.0 3.78e-01 73.1% 48.2%
4028834 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.63 39.0 3.20e-01 74.6% 34.2%
3646441 2484.1.1.205 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27035 0.62 42.0 3.56e-01 70.1% 67.3%
3808328 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 38.0 3.15e-01 77.6% 33.6%
3882038 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.61 37.0 2.83e-01 77.6% 25.8%
3504386 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.61 39.0 3.88e-01 77.6% 61.4%
3509056 221.13.1.0 ↗ a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.61 46.0 3.71e-01 79.1% 78.4%
5050853 2004.1.1.16 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.61 42.0 2.83e-01 76.1% 17.8%
4944318 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 41.0 3.25e-01 74.6% 32.6%
3353638 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.61 41.0 2.83e-01 70.1% 67.8%
4928701 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 45.0 3.86e-01 77.6% 55.2%
3650304 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.60 41.0 4.36e-01 76.1% 80.0%
4928263 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 44.0 3.76e-01 77.6% 52.7%
3482975 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.60 39.0 3.26e-01 76.1% 36.0%
3732470 244.1.1.5 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › FAD_binding_3 0.60 42.0 3.08e-01 74.6% 91.9%
3694428 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.60 42.0 2.60e-01 74.6% 41.9%
4928935 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 43.0 3.78e-01 76.1% 56.0%
4026222 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 46.0 3.51e-01 80.6% 42.8%
3825338 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 37.0 2.93e-01 74.6% 30.4%
4971611 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.59 42.0 3.01e-01 74.6% 67.0%
None — 0.59 37.0 2.98e-01 73.1% 30.4%
5049111 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 42.0 3.42e-01 77.6% 40.0%
4989913 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 39.0 2.61e-01 70.1% 24.2%
5068224 2003.1.3.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.58 43.0 2.68e-01 79.1% 25.1%
4081797 3860.1.1.158 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › ThrE 0.57 45.0 3.59e-01 88.1% 51.0%
4029381 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 40.0 2.95e-01 74.6% 27.2%
3688914 283.1.1.4 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › ThrE 0.57 45.0 3.61e-01 88.1% 52.9%
4040937 5.1.7.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.56 45.0 2.49e-01 91.0% 16.8%
3500755 304.55.1.14 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp 0.56 39.0 2.74e-01 71.6% 27.1%
5051613 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 38.0 3.19e-01 74.6% 39.8%
5074371 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 41.0 3.20e-01 77.6% 37.9%
3959341 223.3.1.1 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.54 39.0 3.17e-01 79.1% 87.9%
4947650 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 38.0 3.26e-01 76.1% 45.2%
4822819 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.52 37.0 2.99e-01 77.6% 45.9%
3387865 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 34.0 3.09e-01 76.1% 47.4%
4017732 220.1.1.202 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N 0.51 38.0 3.03e-01 88.1% 36.7%
3364063 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.51 42.0 3.47e-01 98.5% 48.6%
4948154 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 41.0 3.51e-01 95.5% 60.0%
4409134 192.8.1.259 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › APG6 0.51 41.0 2.83e-01 94.0% 36.0%
4976411 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 43.0 2.63e-01 100.0% 61.0%
4223616 2011.2.1.3 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro 0.50 41.0 3.11e-01 97.0% 60.0%
4028321 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 45.0 3.28e-01 100.0% 81.1%