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KY658673.3__ARB12852.1__H2_0074__00073

Bact-Vir

KY658673.3__ARB12852.1__H2_0074__00073

Identity

Accession:
KY658673 ↗
Kingdom:
phage

Quality

85.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-80
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vd3A03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 51.0 5.29e-01 83.3% 93.2%
3cjsA00 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.66 47.0 5.35e-01 87.2% 100.0%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 51.0 4.67e-01 82.1% 84.8%
1mw7A03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.63 49.0 5.04e-01 83.3% 93.3%
2yx1A01 3.30.70.2580 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 47.0 5.02e-01 87.2% 95.5%
1v5vA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.62 46.0 4.37e-01 79.5% 98.9%
3r8yA01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.62 42.0 4.50e-01 83.3% 84.8%
2i8eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 46.0 4.79e-01 82.1% 98.6%
1earA02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.61 44.0 4.63e-01 91.0% 87.0%
3tj8A02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.61 45.0 4.65e-01 87.2% 83.8%
2wbmA03 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 47.0 4.95e-01 84.6% 98.6%
1gmuA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.60 43.0 4.60e-01 87.2% 88.1%
3gv5B01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.60 49.0 4.15e-01 89.7% 90.9%
1lfpA03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.60 46.0 4.79e-01 83.3% 89.0%
8dgfB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 46.0 3.52e-01 82.1% 69.1%
4mz0B05 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.60 45.0 4.82e-01 83.3% 94.0%
2h1yA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.60 45.0 4.75e-01 83.3% 91.4%
3v4mB00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 52.0 4.70e-01 94.9% 97.1%
2lxiA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 45.0 4.33e-01 83.3% 92.3%
3mahA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 44.0 4.66e-01 82.1% 100.0%
4makB00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 45.0 4.63e-01 84.6% 88.2%
6ahuH01 3.30.70.3250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribonuclease P, Pop5 subunit 0.58 47.0 4.47e-01 88.5% 100.0%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.58 40.0 4.16e-01 71.8% 85.9%
6k2eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 44.0 4.66e-01 83.3% 95.6%
3v8vA01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.58 50.0 3.68e-01 98.7% 68.4%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 47.0 4.50e-01 91.0% 93.5%
1zpwX00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 48.0 4.80e-01 100.0% 90.2%
1in0A01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 43.0 4.54e-01 83.3% 100.0%
3tzyA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.57 42.0 4.38e-01 83.3% 88.6%
1s7hA02 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 45.0 4.46e-01 87.2% 97.6%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 46.0 4.50e-01 91.0% 97.8%
1lxjA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 43.0 3.99e-01 83.3% 75.7%
3oq2A00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 48.0 4.53e-01 100.0% 84.8%
3ungC03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.56 45.0 3.85e-01 91.0% 73.7%
3ezjA03 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.54 36.0 4.03e-01 74.4% 98.2%
2j0wA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 39.0 4.03e-01 79.5% 100.0%
3h7mA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 46.0 4.36e-01 97.4% 88.3%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.53e-01 75.6% 91.8%
3qslA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 44.0 3.97e-01 96.2% 81.1%
1vigA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.51 36.0 3.72e-01 74.4% 93.0%
2cxiA03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.51 36.0 3.80e-01 74.4% 85.7%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3519123 304.169.1.3 a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WCX 0.74 53.0 5.04e-01 83.3% 64.4%
3989567 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.74 54.0 6.00e-01 83.3% 100.0%
4934123 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.73 51.0 5.71e-01 80.8% 95.0%
4030744 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.73 46.0 5.39e-01 79.5% 100.0%
5057426 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.70 47.0 5.21e-01 87.2% 91.7%
5026454 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.69 50.0 5.37e-01 87.2% 90.8%
3709579 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.69 51.0 4.96e-01 88.5% 71.8%
4927584 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.67 46.0 5.19e-01 79.5% 100.0%
3310093 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.67 43.0 4.79e-01 83.3% 85.0%
5000640 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.67 51.0 5.50e-01 83.3% 96.9%
3388053 3253.1.1.1 a+b two layers › ferredoxin-like domain in flagellar biosynthesis protein flhA › ferredoxin-like domain in flagellar biosynthesis protein flhA › ferredoxin-like domain in flagellar biosynthesis protein flhA › FHIPEP 0.66 41.0 4.91e-01 82.1% 98.0%
4565839 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.66 48.0 5.33e-01 87.2% 100.0%
5007506 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.65 51.0 4.97e-01 83.3% 77.6%
5065755 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.65 55.0 4.44e-01 93.6% 78.7%
3322344 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 41.0 4.73e-01 83.3% 92.7%
3443621 242.3.1.1 a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I 0.64 45.0 3.59e-01 73.1% 50.6%
4461494 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.64 47.0 5.04e-01 83.3% 93.8%
4310314 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.64 43.0 4.79e-01 82.1% 98.2%
4215184 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.64 50.0 5.20e-01 83.3% 92.9%
4940257 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 49.0 5.12e-01 82.1% 100.0%
4206076 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.63 48.0 5.20e-01 82.1% 98.5%
5025013 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.63 43.0 4.83e-01 79.5% 100.0%
3588994 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.63 45.0 4.95e-01 82.1% 98.3%
4886247 4143.1.1.10 a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › RlmL_1st 0.63 45.0 4.88e-01 82.1% 98.3%
4957900 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.63 47.0 5.08e-01 80.8% 100.0%
5009387 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.62 45.0 4.94e-01 82.1% 100.0%
4115093 304.120.1.5 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › RlmL_1st 0.62 44.0 4.85e-01 82.1% 98.3%
4974982 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.62 45.0 4.95e-01 83.3% 100.0%
5039780 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.62 43.0 4.59e-01 89.7% 86.2%
5040248 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.62 48.0 4.89e-01 83.3% 94.7%
4038014 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.62 46.0 4.43e-01 79.5% 88.9%
4932042 3696.1.1.0 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.62 48.0 4.01e-01 92.3% 47.8%
4980299 304.6.1.0 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.62 53.0 3.81e-01 100.0% 43.6%
4033416 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.62 49.0 5.15e-01 87.2% 95.7%
5010216 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.62 48.0 5.06e-01 96.2% 95.7%
4604387 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.61 44.0 4.54e-01 75.6% 97.3%
4064506 304.147.1.1 a+b two layers › Alpha-beta plaits › Tetrahydrodipicolinate acetyltransferase N-terminal domain › Tetrahydrodipicolinate acetyltransferase N-terminal domain › DapH_N 0.61 42.0 4.56e-01 83.3% 91.7%
3226058 304.8.1.54 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_13 0.61 46.0 4.72e-01 80.8% 100.0%
5293 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.61 44.0 4.64e-01 91.0% 88.2%
4217450 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.61 44.0 4.57e-01 91.0% 85.7%
4945822 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.61 43.0 3.66e-01 74.4% 49.6%
3386186 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.60 47.0 4.60e-01 84.6% 88.2%
3767943 304.6.1.1 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.60 51.0 3.94e-01 100.0% 56.4%
4249416 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.60 43.0 4.53e-01 91.0% 87.1%
5025706 304.6.1.1 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.59 51.0 3.70e-01 100.0% 43.3%
4947413 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.59 44.0 4.69e-01 83.3% 96.9%
4235667 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.59 51.0 5.05e-01 100.0% 90.6%
5025962 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 42.0 4.16e-01 74.4% 78.8%
4952238 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.59 51.0 5.05e-01 100.0% 91.8%
5082595 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.59 42.0 4.50e-01 74.4% 95.4%
4984434 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.58 44.0 4.71e-01 82.1% 100.0%
5060568 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.58 42.0 4.59e-01 79.5% 100.0%
4956946 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.58 47.0 3.09e-01 89.7% 20.0%
4990073 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 41.0 4.28e-01 73.1% 84.3%
3618884 304.6.1.1 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.58 49.0 3.59e-01 100.0% 44.1%
4946311 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.58 44.0 4.49e-01 83.3% 94.7%
4487906 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.58 50.0 4.82e-01 100.0% 88.9%
3784944 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.57 43.0 2.93e-01 83.3% 36.7%
5057658 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 41.0 4.46e-01 82.1% 100.0%
5043432 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.57 50.0 4.80e-01 100.0% 88.9%
4998680 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.57 45.0 4.69e-01 87.2% 98.6%
4663993 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.57 50.0 4.92e-01 100.0% 91.8%
4641170 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.56 48.0 4.68e-01 100.0% 87.8%
4200151 242.2.1.2 a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N 0.56 41.0 4.28e-01 79.5% 87.1%
4966564 242.2.1.2 a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N 0.56 41.0 4.29e-01 80.8% 87.1%
5013039 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.54 36.0 3.51e-01 71.8% 61.2%
4948773 2008.2.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.54 40.0 3.15e-01 80.8% 36.7%
4166447 304.56.1.0 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.54 45.0 4.28e-01 97.4% 82.1%
4994451 242.2.1.2 a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N 0.53 37.0 3.84e-01 80.8% 81.4%