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KY684082.1__AVD98961.1__X__00006

Bact-Vir

KY684082.1__AVD98961.1__X__00006

Identity

Accession:
KY684082 ↗
Kingdom:
phage

Quality

91.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Drulisvirus› Shigella_phage_SFN6B

TaxID: 1785176

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-62
PDB
Domain cluster: rep: NC_047811.1__YP_009789246.1__HOR62_gp07__00007__D4-59
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.80 46.0 4.42e-01 100.0% 50.0%
4gr5C01 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.74 44.0 4.22e-01 100.0% 51.6%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 56.0 5.18e-01 100.0% 92.1%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 52.0 4.43e-01 94.7% 81.2%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 54.0 3.97e-01 100.0% 88.8%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 4.91e-01 100.0% 82.4%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.60 49.0 4.76e-01 100.0% 83.6%
2k4yA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.59 49.0 4.39e-01 96.5% 83.7%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 48.0 4.23e-01 100.0% 59.8%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 43.0 3.69e-01 93.0% 48.4%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 42.0 4.20e-01 98.2% 75.0%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.58 49.0 4.41e-01 98.2% 74.7%
1okeB02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.58 46.0 4.31e-01 98.2% 70.1%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 4.11e-01 100.0% 71.2%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.11e-01 94.7% 71.4%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 46.0 4.31e-01 94.7% 98.6%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.56 42.0 4.49e-01 91.2% 100.0%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 3.40e-01 89.5% 43.1%
3frnA03 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 4.11e-01 87.7% 86.3%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 44.0 4.15e-01 93.0% 89.3%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 41.0 3.98e-01 98.2% 71.2%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 41.0 4.12e-01 89.5% 80.0%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 4.06e-01 93.0% 91.8%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 43.0 3.95e-01 93.0% 75.9%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.54 42.0 3.94e-01 91.2% 88.2%
4le5B03 3.30.300.10 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.54 40.0 3.24e-01 87.7% 89.6%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.54 41.0 3.33e-01 87.7% 47.2%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.61e-01 96.5% 81.1%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 43.0 3.67e-01 93.0% 92.0%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.25e-01 91.2% 89.5%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.51 40.0 3.80e-01 94.7% 88.2%
1milA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 40.0 3.46e-01 96.5% 92.3%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3225762 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.71 58.0 5.32e-01 91.2% 84.0%
4975150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 57.0 5.62e-01 100.0% 88.3%
3230107 4.2.1.2 ↗ beta barrels › SH3 › SAND › SAND › c-SKI_SMAD_bind 0.68 58.0 4.98e-01 94.7% 84.3%
4980648 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 54.0 5.07e-01 93.0% 71.4%
4995678 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 56.0 5.70e-01 98.2% 98.2%
3302818 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.65 50.0 5.15e-01 94.7% 89.1%
5013892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 51.0 5.25e-01 93.0% 90.9%
3507003 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 54.0 4.98e-01 96.5% 94.7%
5074039 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 52.0 4.80e-01 91.2% 80.0%
3973778 3982.1.1.0 ↗ a+b complex topology › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ 0.63 51.0 4.26e-01 89.5% 77.0%
3708283 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 51.0 4.57e-01 93.0% 87.1%
4646256 2004.1.1.997 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15, AAA_23, AAA_27 0.62 50.0 2.93e-01 91.2% 82.0%
5008718 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.62 50.0 3.00e-01 91.2% 77.2%
4380184 9.11.1.1 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.61 49.0 4.29e-01 91.2% 98.9%
3416068 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.60 49.0 3.65e-01 94.7% 36.8%
5004476 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 43.0 4.24e-01 100.0% 75.4%
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 45.0 4.40e-01 91.2% 84.6%
3590784 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.57 42.0 4.07e-01 94.7% 72.3%
3194888 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.57 48.0 3.62e-01 100.0% 45.0%
3036710 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 44.0 4.30e-01 100.0% 77.8%
4451993 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 41.0 4.15e-01 100.0% 80.0%
5074749 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 42.0 4.01e-01 100.0% 70.0%
1263519 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.56 41.0 4.07e-01 96.5% 75.8%
4403111 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.56 45.0 3.94e-01 94.7% 60.0%
2721389 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.56 44.0 3.93e-01 91.2% 82.6%
4583465 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.56 40.0 4.11e-01 91.2% 90.0%
4053957 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.55 40.0 4.19e-01 93.0% 94.0%
4163851 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.55 41.0 4.12e-01 94.7% 76.7%
1482194 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.55 41.0 4.12e-01 89.5% 80.0%
5041783 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.55 45.0 3.17e-01 96.5% 75.6%
167340 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.55 39.0 4.06e-01 93.0% 91.8%
3724576 4252.1.1.12 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.54 45.0 3.65e-01 98.2% 93.3%
5049033 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.54 42.0 3.93e-01 91.2% 90.7%
4952214 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.54 42.0 3.98e-01 93.0% 86.7%
185266 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.54 37.0 3.84e-01 86.0% 82.7%
5042313 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.54 42.0 3.97e-01 93.0% 88.0%
4499953 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.54 41.0 4.05e-01 93.0% 83.3%
4953054 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 42.0 3.93e-01 100.0% 68.0%
4010317 4.1.1.395 ↗ beta barrels › SH3 › SH3 › SH3 › PF27398 0.53 42.0 4.13e-01 94.7% 83.1%
3943751 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 3.96e-01 96.5% 76.9%
4585317 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.53 37.0 3.81e-01 93.0% 83.6%
4930563 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.53 40.0 3.90e-01 93.0% 90.0%
4033110 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.53 41.0 3.84e-01 91.2% 90.7%
4385345 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.52 37.0 3.80e-01 91.2% 90.0%
4668201 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.52 37.0 3.82e-01 87.7% 90.0%
4252943 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.52 37.0 3.82e-01 89.5% 90.0%
3855217 2002.1.1.106 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD 0.52 41.0 2.64e-01 94.7% 51.7%
3582226 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 44.0 3.08e-01 100.0% 52.4%
5014493 331.3.1.12 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › STK_08120-like 0.52 44.0 2.99e-01 100.0% 28.7%
4662294 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 37.0 3.81e-01 93.0% 87.3%