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KY697807.1__ARB07002.1__X__00013

Bact-Vir

KY697807.1__ARB07002.1__X__00013

Identity

Accession:
KY697807 ↗
Kingdom:
phage

Quality

89.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-155
PDB
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.80 64.0 6.82e-01 100.0% 94.9%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.78 63.0 6.81e-01 98.7% 99.2%
3fz2A00 3.30.70.1700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U 0.76 59.0 6.45e-01 98.7% 97.7%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.75 49.0 5.64e-01 100.0% 89.4%
4acvA00 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.75 56.0 6.32e-01 99.3% 100.0%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.73 46.0 5.60e-01 99.3% 98.0%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.70 37.0 4.42e-01 82.4% 74.5%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.69 65.0 5.80e-01 100.0% 80.5%
3pcoB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.69 37.0 4.65e-01 96.1% 85.1%
2l25A00 3.30.2000.20 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.69 58.0 5.99e-01 100.0% 96.5%
2rb7A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 37.0 4.34e-01 87.6% 75.7%
1ie0A00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.67 40.0 4.01e-01 74.5% 56.4%
3ct9A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 37.0 4.35e-01 87.6% 76.6%
3nrbB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.65 33.0 4.31e-01 87.6% 88.0%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 40.0 4.60e-01 92.8% 85.8%
4nasB01 3.30.70.150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain 0.64 41.0 4.72e-01 89.5% 87.6%
1txkB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 36.0 4.16e-01 83.0% 74.8%
5k8mA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 41.0 4.37e-01 89.5% 74.8%
5xoyB02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 35.0 4.10e-01 86.3% 77.6%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 48.0 5.11e-01 93.5% 91.2%
4fprB00 3.30.70.2910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 42.0 4.50e-01 91.5% 81.2%
4n4rB00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.61 35.0 3.59e-01 94.8% 57.0%
3pfoA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 40.0 4.29e-01 85.6% 78.1%
2w59B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 34.0 3.86e-01 84.3% 73.7%
3nrfA00 2.60.40.4110 Mainly Beta › Sandwich › Immunoglobulin-like › Protein of unknown function DUF4354 0.59 35.0 4.10e-01 81.7% 86.3%
2f7vA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 35.0 4.01e-01 87.6% 81.5%
6ue9L02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 33.0 3.63e-01 83.7% 68.0%
3tx8A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 35.0 3.96e-01 86.9% 78.9%
1ekrA00 3.30.70.640 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain 0.57 41.0 4.28e-01 92.8% 79.0%
3gb0A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 37.0 4.19e-01 89.5% 88.4%
4q7aC02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 36.0 4.19e-01 90.2% 89.8%
4afhE00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.56 41.0 3.70e-01 90.2% 55.2%
3l4gC04 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 51.0 4.16e-01 100.0% 94.5%
4bhqA00 3.30.70.2830 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 37.0 4.27e-01 96.1% 96.3%
1yc9A02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.54 26.0 3.36e-01 92.2% 80.7%
3qfgA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 39.0 3.98e-01 87.6% 78.6%
8eisA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.53 41.0 3.74e-01 86.9% 60.5%
3qw9B00 2.60.40.4100 Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-C domain 0.53 37.0 3.63e-01 83.7% 65.7%
4uxuA00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.51 46.0 4.17e-01 99.3% 81.4%
6ofsA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 43.0 4.05e-01 90.2% 83.7%
2rc5B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 34.0 3.57e-01 86.9% 74.3%
2bj0A00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.50 45.0 4.16e-01 98.7% 82.8%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5454 304.124.1.2 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Gp37 0.80 64.0 6.86e-01 100.0% 96.3%
3964886 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.79 69.0 7.17e-01 97.4% 98.6%
5083619 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.79 69.0 7.13e-01 99.3% 97.2%
4957584 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.78 57.0 6.51e-01 98.7% 99.1%
2642577 304.124.1.3 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF3168 0.78 64.0 6.77e-01 99.3% 97.0%
5004177 304.124.1.3 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF3168 0.78 61.0 6.68e-01 98.0% 99.2%
4034134 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.76 58.0 6.39e-01 97.4% 97.6%
4928893 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.76 67.0 6.85e-01 99.3% 97.9%
4391298 304.18.1.1 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.75 40.0 4.98e-01 83.7% 84.0%
3585212 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.74 69.0 6.13e-01 100.0% 90.7%
4883824 304.124.1.6 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF5072 0.74 59.0 6.40e-01 100.0% 98.4%
4307206 304.18.1.1 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.74 40.0 4.98e-01 83.7% 86.0%
364035 304.124.1.1 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_U 0.74 59.0 6.31e-01 99.3% 97.0%
5040945 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.73 64.0 6.52e-01 100.0% 95.3%
5078308 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.72 60.0 6.39e-01 100.0% 99.3%
4053933 304.18.1.1 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.72 40.0 4.75e-01 84.3% 78.1%
4477461 304.18.1.1 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.72 38.0 4.70e-01 83.0% 82.1%
3844480 304.47.1.0 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain 0.71 39.0 4.38e-01 85.6% 68.3%
3970985 304.124.1.9 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_terminator_9 0.70 61.0 6.34e-01 100.0% 99.3%
3449841 310.3.1.14 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › DUF7049 0.69 42.0 5.27e-01 81.0% 98.9%
4936076 304.8.1.96 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26798 0.68 35.0 4.51e-01 85.6% 87.1%
3606930 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.68 48.0 5.48e-01 98.0% 100.0%
3588477 304.31.1.1 a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › HMG-CoA_red 0.67 43.0 4.98e-01 90.8% 89.1%
5003262 304.124.1.10 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Pvc16_N 0.67 62.0 5.98e-01 100.0% 98.8%
5051036 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.66 51.0 4.72e-01 97.4% 63.1%
4988375 304.8.1.96 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26798 0.65 33.0 4.15e-01 86.3% 81.8%
4017442 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 39.0 3.95e-01 85.6% 60.0%
3971017 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.64 38.0 4.30e-01 90.8% 79.1%
3218984 304.18.1.0 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS 0.64 38.0 4.25e-01 87.6% 75.0%
1264314 304.10.1.1 a+b two layers › Alpha-beta plaits › RuBisCO, large subunit, small (N-terminal) domain › RuBisCO, large subunit, small (N-terminal) domain › RuBisCO_large_N 0.63 39.0 4.49e-01 91.5% 84.1%
3622609 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 39.0 4.36e-01 85.6% 80.9%
1124197 304.141.1.1 a+b two layers › Alpha-beta plaits › Avirulence Effector AvrLm4-7 › Avirulence Effector AvrLm4-7 › AvrLm4-7 0.62 42.0 4.48e-01 91.5% 80.0%
4136515 310.3.1.23 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › RP854 0.61 47.0 4.71e-01 99.3% 77.5%
141279 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.61 42.0 4.49e-01 87.6% 80.9%
4941197 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 36.0 3.61e-01 83.7% 55.6%
4034209 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.60 49.0 5.27e-01 92.8% 100.0%
3929879 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.59 40.0 3.95e-01 87.6% 64.6%
4048260 304.42.1.1 a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC 0.58 39.0 3.89e-01 98.0% 66.5%
4258446 314.1.1.0 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.58 53.0 4.05e-01 99.3% 66.4%
4941514 11.1.5.59 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 0.57 35.0 4.35e-01 83.7% 98.9%
3861891 330.1.1.26 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_RDM1 0.57 32.0 3.46e-01 96.1% 63.0%
3795203 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 33.0 2.77e-01 96.7% 30.8%
3178421 2003.1.5.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 0.55 40.0 2.97e-01 75.8% 46.8%
3689744 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.54 40.0 2.82e-01 76.5% 47.2%
3588078 872.3.1.0 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.54 32.0 4.05e-01 91.5% 98.9%
5054179 304.42.1.1 a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC 0.54 39.0 4.06e-01 90.8% 79.3%
4945880 304.42.1.1 a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC 0.54 39.0 4.01e-01 90.8% 77.9%
3269830 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.54 37.0 3.95e-01 86.9% 79.3%
3969233 11.1.5.59 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 0.54 40.0 4.39e-01 85.0% 95.2%
3736793 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.53 45.0 4.35e-01 90.2% 81.7%
4937077 304.102.1.2 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD 0.53 45.0 4.13e-01 92.8% 90.2%
3384696 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.52 48.0 4.61e-01 98.7% 90.2%
3327314 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 47.0 3.26e-01 98.7% 30.0%
5039316 304.102.1.2 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD 0.50 43.0 3.88e-01 92.8% 87.9%