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KY707339.1__ARM70481.1__jbd68_19__00020

Bact-Vir

KY707339.1__ARM70481.1__jbd68_19__00020

Identity

Accession:
KY707339 ↗
Kingdom:
phage

Quality

67.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 46-171
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 30.0 4.08e-01 82.5% 88.9%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 30.0 4.08e-01 82.5% 90.3%
6x05A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 57.0 4.04e-01 100.0% 42.4%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.62 40.0 4.68e-01 99.2% 94.3%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 32.0 4.13e-01 73.0% 89.9%
4boeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 40.0 3.75e-01 86.5% 54.5%
3qz4A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 53.0 4.06e-01 98.4% 75.8%
8gn6A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.60 52.0 3.81e-01 97.6% 34.9%
1uypA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 53.0 4.11e-01 100.0% 73.1%
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 38.0 3.44e-01 89.7% 47.7%
3wasA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 52.0 3.73e-01 100.0% 45.0%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 47.0 4.78e-01 86.5% 96.1%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.58 43.0 3.95e-01 98.4% 60.5%
3ia8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 39.0 3.64e-01 93.7% 54.3%
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 46.0 4.79e-01 94.4% 99.1%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 45.0 4.51e-01 92.9% 99.2%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 30.0 3.71e-01 82.5% 91.9%
3dtdD00 2.60.40.1880 Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein 0.53 39.0 3.72e-01 74.6% 97.2%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 45.0 4.51e-01 92.9% 94.7%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 33.0 3.19e-01 96.0% 54.4%
1jmxB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 47.0 3.46e-01 100.0% 45.4%
2c9jA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.52 41.0 3.50e-01 86.5% 66.2%
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 39.0 3.69e-01 90.5% 66.4%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 37.0 3.39e-01 75.4% 97.0%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 4.42e-01 91.3% 100.0%
2pslA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.51 40.0 3.44e-01 87.3% 65.4%
3ai4A00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.50 42.0 3.37e-01 90.5% 90.2%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 43.0 4.36e-01 92.1% 95.1%
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 40.0 3.87e-01 90.5% 74.3%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5052460 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.72 55.0 3.95e-01 98.4% 27.9%
4890223 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.68 55.0 3.94e-01 97.6% 29.9%
3272573 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.67 38.0 4.79e-01 84.9% 94.7%
3832530 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 54.0 3.88e-01 98.4% 30.7%
3218203 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.65 40.0 3.74e-01 87.3% 49.7%
3723122 5.1.2.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF4185 0.63 56.0 4.13e-01 97.6% 40.6%
3797033 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.62 43.0 4.03e-01 100.0% 58.1%
3959925 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.62 38.0 4.18e-01 86.5% 76.0%
3719842 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.62 52.0 3.97e-01 91.3% 51.2%
3513352 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.60 41.0 4.30e-01 90.5% 75.7%
3302166 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 29.0 3.85e-01 91.3% 89.2%
4228328 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.59 33.0 3.97e-01 96.0% 85.0%
3407032 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 53.0 3.75e-01 100.0% 43.3%
3814437 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 50.0 4.56e-01 92.9% 77.0%
4862281 271.1.1.1 beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.58 42.0 3.57e-01 75.4% 69.6%
4932967 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.58 41.0 3.11e-01 96.8% 31.5%
4416182 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.57 42.0 4.61e-01 88.1% 93.3%
5075261 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.56 41.0 3.18e-01 99.2% 34.5%
4966380 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.56 40.0 3.12e-01 98.4% 34.8%
3839915 243.1.1.6 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.55 46.0 4.49e-01 90.5% 99.3%
4946928 5.1.4.43 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.55 50.0 3.43e-01 100.0% 34.0%
3363058 5.1.8.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.54 48.0 4.02e-01 98.4% 90.7%
4978484 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.54 46.0 4.60e-01 92.1% 88.5%
5079533 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.53 40.0 3.30e-01 96.8% 45.6%
5057921 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.53 41.0 3.22e-01 98.4% 41.1%
5013876 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.52 37.0 2.97e-01 97.6% 37.3%
3976326 5084.3.1.2 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.52 43.0 3.84e-01 88.9% 63.3%
28728 271.1.1.1 beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.50 40.0 3.47e-01 87.3% 67.0%
1283375 271.1.1.1 beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.50 40.0 3.41e-01 86.5% 64.4%
4947582 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.50 36.0 2.79e-01 96.8% 33.0%
4977257 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.50 37.0 2.93e-01 99.2% 38.4%
D2 medium residues 176-339
PDB
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gf4A00 2.40.160.180 Mainly Beta › Beta Barrel › Porin › Carbohydrate-selective porin OprB 0.76 50.0 3.99e-01 95.7% 36.1%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.69 27.0 4.46e-01 73.2% 96.8%
6wilA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.69 55.0 4.20e-01 96.3% 38.7%
1fepA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.67 60.0 4.09e-01 95.1% 31.5%
5dl8A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.67 51.0 3.79e-01 95.7% 33.2%
8p97A01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.66 58.0 3.81e-01 95.1% 24.8%
6wimA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.64 51.0 3.87e-01 95.7% 37.2%
1kmoA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.64 56.0 3.87e-01 95.1% 29.5%
4epaA00 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.64 57.0 3.77e-01 95.7% 25.3%
4c4vB02 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.61 56.0 4.19e-01 96.3% 51.1%
4afkA00 2.40.160.100 Mainly Beta › Beta Barrel › Porin › 0.60 55.0 3.94e-01 95.7% 43.0%
1lshA04 2.20.80.10 Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex, chain A, domain 4 › Lipovitellin-phosvitin complex, chain A, domain 4 0.60 50.0 4.27e-01 87.2% 96.4%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 28.0 4.11e-01 77.4% 100.0%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.59 41.0 4.30e-01 90.2% 78.2%
2w16A03 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.58 52.0 3.57e-01 95.7% 33.7%
4frxA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.57 52.0 3.83e-01 95.7% 39.6%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.56 41.0 4.40e-01 89.0% 85.5%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.55 44.0 4.39e-01 89.0% 80.5%
4meeA00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.54 45.0 3.74e-01 96.3% 49.2%
3qq2B00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.54 48.0 4.21e-01 98.2% 72.0%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.53 48.0 4.07e-01 98.2% 70.3%
3obaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 42.0 3.44e-01 84.8% 99.3%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.52 41.0 4.28e-01 83.5% 96.6%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3976823 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.75 48.0 3.50e-01 95.7% 24.9%
1716664 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.71 57.0 4.11e-01 95.1% 32.1%
3971477 5084.5.3.0 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel 0.70 63.0 4.14e-01 94.5% 32.4%
3398781 5087.3.1.2 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd 0.67 59.0 4.83e-01 92.1% 63.5%
4870099 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.67 61.0 4.12e-01 95.7% 33.9%
3235255 5087.3.1.1 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht 0.67 49.0 3.81e-01 75.0% 62.6%
2582184 5087.3.1.2 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd 0.67 57.0 4.72e-01 88.4% 75.4%
3493155 5087.3.1.2 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd 0.67 57.0 4.47e-01 88.4% 73.8%
3616128 5087.3.1.2 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd 0.67 58.0 4.81e-01 90.9% 63.1%
3470169 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.66 62.0 4.50e-01 98.8% 68.5%
3235810 5087.3.1.2 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd 0.65 56.0 4.68e-01 90.9% 63.7%
3875809 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.65 40.0 4.01e-01 97.0% 60.6%
4679157 5084.5.1.5 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.64 51.0 3.84e-01 95.7% 36.0%
4618904 5084.5.1.5 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.64 51.0 3.86e-01 96.3% 36.3%
4440914 5084.5.3.0 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel 0.63 55.0 3.56e-01 95.7% 22.4%
3970531 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.63 56.0 3.74e-01 95.7% 29.4%
3964588 5084.5.1.5 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.61 56.0 4.43e-01 96.3% 50.6%
4524066 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.61 54.0 3.68e-01 95.1% 33.4%
4084470 5087.3.1.1 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht 0.61 51.0 4.09e-01 87.2% 64.3%
4244652 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.61 57.0 4.20e-01 100.0% 56.8%
3967762 5084.5.1.5 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.61 56.0 4.14e-01 96.3% 44.2%
4181051 5087.3.1.1 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht 0.60 52.0 3.65e-01 92.1% 34.5%
3534691 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.60 41.0 4.19e-01 89.6% 70.3%
3925444 5087.3.1.0 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C 0.60 48.0 4.44e-01 84.8% 82.8%
3921650 5087.3.1.1 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht 0.58 47.0 3.56e-01 84.1% 61.1%
3919272 5087.3.1.1 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht 0.58 50.0 3.72e-01 93.9% 40.7%
3941832 5084.5.1.5 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.57 53.0 3.98e-01 99.4% 84.5%
3916711 5087.3.1.1 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht 0.56 51.0 3.74e-01 95.1% 85.9%
1294369 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.54 45.0 3.74e-01 96.3% 49.2%
4421608 5084.1.1.35 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Surface_Ag_2 0.53 42.0 3.72e-01 83.5% 97.4%
4669999 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.52 47.0 3.86e-01 98.8% 63.8%
3979319 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.52 45.0 3.78e-01 95.1% 92.5%
4009884 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.51 46.0 3.76e-01 97.0% 76.6%
D3 medium residues 375-459
PDB