←Back to structures

KY744240.1__ARQ94578.1__pwc_44__00044

Bact-Vir

KY744240.1__ARQ94578.1__pwc_44__00044

Identity

Accession:
KY744240 ↗
Kingdom:
phage

Quality

65.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Weissella_phage_PWc

TaxID: 1970788

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-181
PDB
Domain cluster: rep: GQ141189.1__ADD65705.1__BBP_0925__00007__D1-178
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gysA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 31.0 4.40e-01 90.1% 86.0%
2nwaA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.63 26.0 3.93e-01 87.3% 90.7%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.60 32.0 4.38e-01 92.3% 100.0%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.59 31.0 3.89e-01 100.0% 82.0%
1o0vA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 28.0 3.56e-01 78.5% 74.5%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.59 33.0 4.37e-01 90.6% 100.0%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.57 28.0 3.70e-01 80.1% 87.1%
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 33.0 4.21e-01 100.0% 98.1%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 35.0 4.28e-01 89.5% 93.3%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.55 33.0 3.83e-01 100.0% 83.6%
4gioA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 29.0 3.84e-01 90.1% 93.8%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 34.0 3.79e-01 89.5% 75.8%
2qckA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 35.0 3.88e-01 89.5% 80.1%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 35.0 3.77e-01 89.5% 78.1%
2nr4A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 33.0 3.80e-01 89.5% 85.0%
4f07E00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 34.0 3.76e-01 89.5% 79.9%
2r0xA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 35.0 3.76e-01 89.0% 78.2%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 34.0 3.75e-01 89.5% 78.9%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 35.0 3.53e-01 89.5% 68.2%
3cb0D00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 35.0 3.77e-01 89.5% 78.3%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 35.0 3.74e-01 89.5% 78.8%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 34.0 3.71e-01 89.5% 78.2%
4xhyA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 34.0 3.63e-01 89.5% 75.2%
3d2uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 26.0 3.66e-01 89.5% 100.0%
1yoaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 34.0 3.68e-01 89.5% 79.2%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 34.0 3.60e-01 89.5% 75.3%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3844943 11.1.1.117 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › EpoR_lig-bind 0.67 30.0 4.12e-01 91.2% 80.0%
4344991 1.1.5.35 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › YwpF 0.65 36.0 4.21e-01 89.0% 75.4%
4500974 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.65 34.0 4.09e-01 100.0% 75.0%
185652 3070.1.1.4 ↗ a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › STN 0.65 39.0 4.55e-01 77.3% 83.6%
1501 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 30.0 4.16e-01 83.4% 91.5%
4259247 1.11.1.1 ↗ beta barrels › cradle loop barrel › Photosystem II accessory factor Psb28 › Photosystem II accessory factor Psb28 › Psb28 0.61 31.0 4.04e-01 88.4% 87.9%
4318415 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.61 29.0 3.86e-01 90.1% 84.2%
4966449 1.1.13.72 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CBS 0.61 30.0 3.96e-01 89.0% 87.4%
5049721 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.60 36.0 4.22e-01 98.9% 84.0%
4344687 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.60 24.0 3.05e-01 87.8% 60.0%
3997045 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.57 26.0 3.47e-01 81.2% 77.9%
3193183 1.1.7.24 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.56 31.0 3.66e-01 98.3% 78.3%
3720023 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 31.0 4.17e-01 90.6% 100.0%
4485646 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.56 27.0 3.77e-01 87.8% 96.5%
3688711 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.54 33.0 4.15e-01 89.5% 98.2%
164880 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.54 35.0 3.80e-01 89.5% 75.5%
300370 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.52 35.0 3.75e-01 89.5% 77.6%
4489896 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.52 35.0 3.55e-01 89.5% 68.3%
1217791 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.52 34.0 3.52e-01 89.5% 69.6%
3614391 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 28.0 3.66e-01 90.1% 95.0%
3964364 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.52 35.0 3.72e-01 89.5% 75.8%
4233298 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.52 35.0 3.64e-01 89.5% 72.4%
3741921 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.52 30.0 3.90e-01 89.5% 100.0%
1064500 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.51 35.0 3.69e-01 89.5% 76.9%
5055743 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.51 35.0 3.91e-01 89.0% 87.9%
4551218 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.51 34.0 3.58e-01 89.5% 73.3%
3279401 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.51 34.0 3.62e-01 89.5% 73.9%
4061526 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.51 28.0 3.60e-01 86.2% 94.0%
4322066 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.51 34.0 3.50e-01 89.5% 71.2%
1219773 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.50 27.0 3.62e-01 90.1% 96.9%
3959626 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.50 34.0 3.58e-01 89.5% 75.2%
72 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.50 34.0 3.68e-01 89.5% 79.2%
3744150 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.50 35.0 3.56e-01 90.1% 70.7%
4882518 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.50 34.0 3.67e-01 89.5% 80.0%
D2 medium residues 182-204_303-380
PDB
D3 medium residues 235-285
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5053635 2002.1.1.102 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP 0.51 37.0 2.34e-01 80.4% 28.1%
D4 medium residues 400-507
PDB
D5 medium residues 602-676
PDB
D6 medium residues 677-738
PDB