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KY779848.1__ARQ95907.1__qdsa001_151__00151

Bact-Vir

KY779848.1__ARQ95907.1__qdsa001_151__00151

Identity

Accession:
KY779848 ↗
Kingdom:
phage

Quality

83.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Silviavirus› Staphylococcus_phage_qdsa001

TaxID: 1970744

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 162-324
PDB
Domain cluster: rep: KY549443.1__APZ81962.1__EFP01_035__00035__D198-223_277-373
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 29.0 3.53e-01 100.0% 51.3%
1wncB00 1.20.5.300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.73 27.0 3.82e-01 100.0% 67.9%
1t7pA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.73 64.0 6.57e-01 100.0% 94.9%
4od4A02 1.20.120.1780 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase 0.69 28.0 3.33e-01 100.0% 54.6%
1gqeA01 1.20.58.410 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor 0.62 33.0 3.92e-01 100.0% 73.5%
3ofnY00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.58 29.0 3.36e-01 100.0% 64.3%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.56 25.0 3.01e-01 78.5% 59.4%
6d5xA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.56 39.0 4.03e-01 99.4% 75.5%
2a3qA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.55 28.0 3.30e-01 96.9% 69.0%
1sj8A02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.52 38.0 4.38e-01 95.7% 100.0%
3fseB02 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 35.0 3.76e-01 97.5% 77.8%
3ihuA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.50 30.0 3.25e-01 90.2% 67.6%
7cj3A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.50 39.0 3.36e-01 81.6% 83.7%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4977139 601.7.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.82 32.0 3.51e-01 98.2% 45.2%
5031295 601.7.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.79 32.0 3.53e-01 100.0% 45.7%
3840131 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.78 29.0 3.15e-01 100.0% 40.0%
4988975 5069.1.1.95 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Nitrate_red_gam 0.65 33.0 3.21e-01 100.0% 43.3%
5051714 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.61 33.0 3.09e-01 100.0% 45.8%
5069039 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.56 35.0 3.78e-01 100.0% 71.3%
5057793 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.55 39.0 4.05e-01 100.0% 77.3%
3716875 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.54 24.0 2.88e-01 82.8% 60.0%
3239790 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 30.0 3.49e-01 100.0% 80.9%
D2 medium residues 12-157
PDB
D3 medium residues 399-466_706-752
PDB
Domain cluster: rep: NC_049857.1__YP_009905618.1__H1Z36_gp148__00099__D564-618_811-862
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14890.12 best Intein_splicing 38.0 2.10e-09 97.4% 67.1%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mi8A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.95 68.0 6.24e-01 100.0% 59.6%
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.88 68.0 5.81e-01 98.3% 53.8%
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.88 69.0 5.88e-01 99.1% 54.7%
1at0A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.88 67.0 6.14e-01 100.0% 62.8%
4e2tB00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.86 68.0 5.83e-01 98.3% 55.6%
2jmzA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.86 65.0 5.60e-01 98.3% 53.6%
2imzA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.85 64.0 5.84e-01 97.4% 62.0%
1dq3A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.84 69.0 5.74e-01 98.3% 54.2%
5o9iA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.84 68.0 5.76e-01 98.3% 56.1%
1am2A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.77 73.0 6.10e-01 98.3% 68.0%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5023539 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.94 65.0 5.78e-01 97.4% 52.9%
4993853 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.93 70.0 6.07e-01 98.3% 53.9%
4983458 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.91 68.0 5.88e-01 97.4% 53.3%
3949431 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.91 72.0 6.43e-01 99.1% 62.0%
4984220 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.91 65.0 5.80e-01 98.3% 54.8%
4993808 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.90 69.0 6.27e-01 100.0% 62.1%
5029355 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.90 70.0 6.30e-01 98.3% 61.3%
5014852 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.90 60.0 5.47e-01 100.0% 53.8%
5078549 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.90 69.0 6.00e-01 100.0% 56.2%
5028788 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.90 67.0 6.17e-01 100.0% 62.9%
5066163 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.90 70.0 6.50e-01 99.1% 66.4%
4943244 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.89 67.0 5.68e-01 97.4% 51.8%
5022295 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.89 67.0 5.82e-01 100.0% 54.5%
4982797 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.88 67.0 6.13e-01 100.0% 62.1%
4993813 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.88 69.0 6.01e-01 100.0% 57.5%
5031634 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.88 71.0 6.19e-01 100.0% 59.4%
5012957 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.88 70.0 5.94e-01 100.0% 54.3%
4993871 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.87 49.0 4.91e-01 76.5% 56.5%
4070999 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.86 68.0 6.04e-01 100.0% 60.6%
4999902 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.85 68.0 6.24e-01 100.0% 66.2%
4342207 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.85 69.0 6.21e-01 99.1% 64.7%
5031914 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.84 71.0 5.91e-01 100.0% 54.6%
4039971 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.84 69.0 5.84e-01 100.0% 56.0%
4993437 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.83 71.0 6.50e-01 100.0% 70.8%
3949584 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.83 68.0 6.12e-01 96.5% 65.3%
4993128 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.82 70.0 6.15e-01 100.0% 63.7%
4565870 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.81 64.0 5.71e-01 100.0% 60.6%
4667152 69.1.1.3 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT 0.80 64.0 5.68e-01 100.0% 60.8%
4983616 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.80 67.0 5.72e-01 99.1% 58.8%
4975503 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.79 70.0 5.89e-01 100.0% 58.9%
4600944 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.79 68.0 5.76e-01 100.0% 58.9%
4487998 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.79 68.0 5.76e-01 100.0% 58.9%
4946209 69.1.1.18 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › DNA_topoisoIV 0.79 75.0 5.93e-01 98.3% 78.0%
4416649 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.78 64.0 5.88e-01 100.0% 67.6%
4274856 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.78 72.0 6.28e-01 97.4% 69.7%
4998392 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.78 73.0 6.33e-01 100.0% 67.9%
4544734 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.78 74.0 5.86e-01 99.1% 73.3%
4993927 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.78 69.0 6.15e-01 97.4% 70.0%
4979524 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 74.0 5.55e-01 100.0% 70.0%
4084747 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.77 74.0 5.12e-01 99.1% 82.2%
4934481 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 64.0 5.84e-01 98.3% 68.2%
3604383 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.76 71.0 5.58e-01 97.4% 69.3%
5066389 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.75 71.0 5.84e-01 100.0% 59.5%
4629526 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.75 72.0 5.04e-01 100.0% 80.0%
4950409 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.74 60.0 5.41e-01 100.0% 63.9%
3511246 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.73 70.0 6.08e-01 100.0% 69.7%
4392318 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.73 68.0 5.66e-01 97.4% 60.5%
D4 medium residues 467-609
PDB
Domain cluster: rep: OR354820.1__WNM50410.1__Alsa1_CDS0060__00060__D21-160
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14528.12 best LAGLIDADG_3 25.1 2.20e-05 57.3% 63.4%
D5 medium residues 610-705
PDB
Domain cluster: rep: IMGVR_UViG_3300027815_000166-3300027815-Ga0209726_100069296__D104-209