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KY794641.1__ARM69055.1__vBSauCG_138__00138

Bact-Vir

KY794641.1__ARM69055.1__vBSauCG_138__00138

Identity

Accession:
KY794641 ↗
Kingdom:
phage

Quality

67.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-63
PDB
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.74 55.0 3.95e-01 79.7% 96.4%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.72 50.0 4.38e-01 74.6% 97.8%
1smpI00 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.72 63.0 5.25e-01 96.6% 89.0%
1jiwI00 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.72 61.0 5.10e-01 96.6% 88.6%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.71 50.0 4.31e-01 74.6% 96.8%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 60.0 4.71e-01 100.0% 61.9%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 42.0 3.96e-01 86.4% 50.7%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.66 59.0 4.17e-01 100.0% 77.2%
2vldB01 2.70.180.20 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › 0.65 56.0 4.55e-01 100.0% 61.0%
2ogkD00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.65 56.0 4.31e-01 100.0% 85.9%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.64 54.0 4.77e-01 94.9% 95.5%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.63 57.0 4.26e-01 98.3% 60.0%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.62 53.0 4.24e-01 100.0% 90.6%
2wnyA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.62 54.0 4.19e-01 100.0% 86.1%
4hh3A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 52.0 4.16e-01 94.9% 86.0%
4ew7A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 55.0 4.36e-01 100.0% 83.2%
5xgbA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.60 51.0 3.69e-01 100.0% 54.7%
5x68A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 48.0 2.88e-01 100.0% 14.4%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.59 51.0 4.23e-01 100.0% 91.8%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.58 42.0 4.39e-01 100.0% 92.0%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 52.0 4.16e-01 98.3% 76.6%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 49.0 4.55e-01 100.0% 96.2%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 3.59e-01 100.0% 51.8%
4jndA02 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.57 48.0 3.09e-01 93.2% 61.5%
4dmzA02 3.30.70.2880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 48.0 3.77e-01 100.0% 65.0%
3fpwA01 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.56 50.0 3.93e-01 100.0% 69.6%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 50.0 4.14e-01 98.3% 86.0%
2h6oA03 2.60.40.2820 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 44.0 3.64e-01 86.4% 98.2%
4p4tA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 42.0 2.72e-01 88.1% 42.4%
1x31C02 3.30.70.1520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Heterotetrameric sarcosine oxidase 0.54 46.0 4.22e-01 98.3% 98.8%
2ic2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 3.71e-01 100.0% 51.9%
4hdjA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 47.0 2.88e-01 98.3% 96.9%
3lifA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 47.0 4.10e-01 98.3% 86.7%
2xdoD00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 46.0 2.77e-01 100.0% 15.1%
3bwlB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 46.0 3.70e-01 100.0% 79.7%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 45.0 3.60e-01 96.6% 59.5%
6c98A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.70e-01 88.1% 71.4%
2g4bA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 45.0 3.94e-01 100.0% 94.6%
2bc4A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.35e-01 84.7% 87.2%
5mmiU01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 43.0 3.77e-01 100.0% 62.2%
2go8A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 44.0 4.19e-01 100.0% 95.9%
1o51A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 44.0 3.92e-01 100.0% 93.3%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.51 42.0 3.14e-01 93.2% 53.5%
5eo9B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.25e-01 86.4% 89.1%
1s28A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 38.0 3.03e-01 100.0% 38.5%
4lfhD02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.62e-01 88.1% 69.4%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 38.0 3.73e-01 98.3% 76.5%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4157284 9.7.1.1 beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › Inh 0.73 64.0 5.25e-01 98.3% 94.3%
4599652 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.70 43.0 3.89e-01 83.1% 45.0%
3732943 3561.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 0.69 60.0 3.73e-01 100.0% 24.9%
4121961 3561.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 0.68 59.0 3.58e-01 100.0% 21.7%
4213492 3561.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 0.68 58.0 3.58e-01 100.0% 22.6%
3737151 3561.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 0.68 58.0 3.49e-01 100.0% 20.7%
4355868 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.67 60.0 4.15e-01 100.0% 74.9%
4498349 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.66 58.0 4.13e-01 100.0% 79.4%
3690811 220.1.1.67 beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.64 57.0 4.80e-01 100.0% 77.0%
140477 882.1.1.4 a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.62 54.0 4.19e-01 100.0% 86.1%
3927540 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.62 54.0 4.58e-01 100.0% 64.0%
3058550 304.48.1.14 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF 0.61 53.0 3.78e-01 100.0% 53.8%
3742084 220.1.1.67 beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.61 54.0 3.92e-01 98.3% 49.1%
5059796 4326.1.1.0 a+b two layers › ERH-like › ERH-like › ERH-like 0.61 40.0 3.90e-01 100.0% 59.4%
4966197 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.60 43.0 2.60e-01 100.0% 11.8%
3961719 323.1.1.5 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.60 47.0 3.49e-01 86.4% 60.6%
5022394 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.59 52.0 4.16e-01 100.0% 97.5%
3594856 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 52.0 4.18e-01 96.6% 66.4%
5048876 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.59 42.0 4.08e-01 100.0% 67.7%
3666673 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 51.0 4.76e-01 100.0% 80.0%
3388281 3019.1.1.0 beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain 0.59 48.0 3.63e-01 100.0% 44.1%
3713703 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 51.0 4.08e-01 96.6% 67.0%
3925945 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.58 50.0 4.39e-01 100.0% 63.3%
None 0.58 44.0 3.47e-01 84.7% 60.7%
3853832 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.58 50.0 4.35e-01 100.0% 93.7%
3990697 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.58 50.0 4.34e-01 100.0% 93.7%
4412642 321.1.1.6 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Pup_ligase 0.57 41.0 2.56e-01 79.7% 89.9%
3219903 304.9.1.81 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RBD_AKAP-17A 0.57 49.0 4.28e-01 100.0% 93.7%
3973731 304.8.1.98 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GDH_ACT3 0.57 43.0 3.27e-01 83.1% 50.0%
3523446 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.57 48.0 4.17e-01 100.0% 77.0%
3278895 304.8.1.98 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GDH_ACT3 0.57 43.0 3.23e-01 84.7% 49.4%
3289663 207.11.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.57 44.0 3.03e-01 86.4% 43.0%
3718648 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 45.0 3.70e-01 88.1% 67.6%
4094634 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.56 46.0 3.97e-01 100.0% 96.2%
4941159 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.56 51.0 4.16e-01 100.0% 58.1%
4245606 304.8.1.98 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GDH_ACT3 0.56 42.0 3.20e-01 84.7% 53.5%
3718060 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.80e-01 100.0% 72.2%
3927031 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.55 45.0 3.91e-01 100.0% 91.4%
5046329 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 37.0 3.30e-01 88.1% 47.1%
4666632 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 45.0 3.93e-01 98.3% 90.0%
4943820 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 47.0 4.29e-01 98.3% 97.5%
3167247 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 47.0 2.87e-01 100.0% 95.5%
4096826 3019.1.1.1 beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN 0.54 44.0 3.76e-01 100.0% 65.5%
3939821 10.12.1.40 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 0.54 42.0 2.67e-01 91.5% 22.8%
4251107 321.1.1.6 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Pup_ligase 0.53 39.0 2.46e-01 86.4% 28.4%
3409529 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.52 44.0 3.88e-01 100.0% 83.2%
5047502 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 45.0 3.44e-01 98.3% 52.1%
3879806 864.1.1.0 a+b two layers › DLC › DLC › DLC 0.52 41.0 3.53e-01 100.0% 55.6%
4614439 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.52 44.0 4.09e-01 100.0% 92.5%
3896468 864.1.1.0 a+b two layers › DLC › DLC › DLC 0.52 42.0 3.81e-01 100.0% 65.0%
1401773 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 39.0 2.62e-01 88.1% 45.9%
3809139 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 43.0 3.98e-01 93.2% 100.0%
3771405 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 45.0 3.28e-01 98.3% 60.0%
4124818 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.51 44.0 3.91e-01 100.0% 85.6%
3437479 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.51 35.0 3.49e-01 86.4% 69.2%
3963468 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 45.0 3.73e-01 100.0% 92.4%
3715519 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 46.0 3.09e-01 100.0% 36.6%
D2 high residues 88-129
PDB