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KY817360.1__ARK07716.1__Toil_gp33__00033
Bact-VirKY817360.1__ARK07716.1__Toil_gp33__00033
Identity
- Accession:
- KY817360 ↗
- Kingdom:
- phage
Quality
72.9
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Tectiliviricetes›
Kalamavirales›
Tectiviridae›
Epsilontectivirus›
Rhodococcus_phage_Toil
TaxID: 1975614
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-90
Domain cluster:
rep: OR521063.1__WNO26421.1__SEA_DEENASA__101__00101__D2-77
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u9tA02 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.69 | 54.0 | 4.31e-01 | 100.0% | 41.4% |
| 2v3aA03 | 3.30.390.120 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.66 | 36.0 | 4.05e-01 | 90.4% | 68.8% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.63 | 45.0 | 3.68e-01 | 77.1% | 97.0% |
| 3cgbA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.62 | 43.0 | 3.95e-01 | 89.2% | 54.5% |
| 3bbjA00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.62 | 47.0 | 3.24e-01 | 100.0% | 25.1% |
| 3lbeB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.61 | 47.0 | 4.08e-01 | 100.0% | 54.0% |
| 3dkzA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.61 | 47.0 | 4.03e-01 | 100.0% | 53.6% |
| 2fs2B00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.61 | 47.0 | 3.90e-01 | 100.0% | 48.6% |
| 1sbkA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.60 | 47.0 | 3.95e-01 | 100.0% | 50.4% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.60 | 40.0 | 4.38e-01 | 100.0% | 86.4% |
| 3na2A00 | 3.40.1570.20 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › | 0.60 | 53.0 | 4.50e-01 | 100.0% | 65.9% |
| 3gekA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.59 | 47.0 | 4.01e-01 | 100.0% | 53.4% |
| 3s4kA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.59 | 47.0 | 4.08e-01 | 100.0% | 56.5% |
| 1q4tA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.59 | 47.0 | 3.88e-01 | 100.0% | 49.3% |
| 4j57A03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.58 | 43.0 | 3.85e-01 | 90.4% | 56.6% |
| 4ffuB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 47.0 | 3.84e-01 | 100.0% | 48.0% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.58 | 41.0 | 4.02e-01 | 74.7% | 100.0% |
| 1r0uA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.58 | 51.0 | 4.28e-01 | 98.8% | 95.8% |
| 4m7xA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 39.0 | 3.86e-01 | 73.5% | 81.3% |
| 4qfwA00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.56 | 47.0 | 3.24e-01 | 100.0% | 28.5% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.56 | 37.0 | 3.83e-01 | 94.0% | 73.7% |
| 1b04A02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.55 | 42.0 | 4.02e-01 | 83.1% | 89.9% |
| 1s5uE00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 47.0 | 3.97e-01 | 100.0% | 56.6% |
| 2ownA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 47.0 | 3.30e-01 | 100.0% | 30.5% |
| 1dgsA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.54 | 41.0 | 3.96e-01 | 80.7% | 92.6% |
| 1l3lA01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.54 | 48.0 | 3.81e-01 | 100.0% | 74.7% |
| 3mfdA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.54 | 47.0 | 3.44e-01 | 100.0% | 89.4% |
| 2p19A01 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.53 | 46.0 | 4.05e-01 | 98.8% | 97.7% |
| 1ywlA00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.53 | 36.0 | 3.47e-01 | 96.4% | 60.4% |
| 4e6xB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 46.0 | 3.21e-01 | 100.0% | 84.7% |
| 6kbyA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 46.0 | 3.01e-01 | 96.4% | 88.1% |
| 2q0oA01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.53 | 46.0 | 3.71e-01 | 100.0% | 79.2% |
| 2a2jA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 40.0 | 3.01e-01 | 81.9% | 85.7% |
| 1yqsA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 45.0 | 3.05e-01 | 100.0% | 85.2% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.52 | 38.0 | 3.71e-01 | 79.5% | 97.9% |
| 7bjkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.52 | 33.0 | 3.04e-01 | 88.0% | 46.9% |
| 5eokA05 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 35.0 | 2.59e-01 | 71.1% | 92.6% |
| 3wwxA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 45.0 | 3.03e-01 | 100.0% | 87.1% |
| 4hslA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 37.0 | 2.96e-01 | 100.0% | 38.6% |
| 3gzaB02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 33.0 | 3.17e-01 | 100.0% | 55.1% |
| 3hduA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 46.0 | 3.73e-01 | 100.0% | 53.9% |
| 6scxC01 | 3.90.79.20 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › | 0.50 | 40.0 | 3.24e-01 | 89.2% | 71.5% |
| 1sh8B00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 45.0 | 3.69e-01 | 100.0% | 54.4% |
| 3owvB00 | 3.40.570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A | 0.50 | 43.0 | 3.26e-01 | 100.0% | 41.5% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5077020 | 244.2.1.11 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › DUF2283 | 0.82 | 40.0 | 4.58e-01 | 90.4% | 63.1% |
| 5012339 | 244.2.1.11 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › DUF2283 | 0.81 | 40.0 | 4.76e-01 | 90.4% | 68.3% |
| 3259158 | 244.2.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › AIF_C | 0.66 | 42.0 | 4.11e-01 | 91.6% | 60.0% |
| 3902810 | 220.1.1.58 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like | 0.65 | 58.0 | 5.05e-01 | 100.0% | 72.0% |
| 4535258 | 220.5.1.1 ↗ | beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N | 0.64 | 58.0 | 5.29e-01 | 100.0% | 83.6% |
| 4959407 | 304.163.1.3 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 | 0.64 | 34.0 | 4.21e-01 | 89.2% | 86.0% |
| 4274357 | 244.2.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rbx_binding | 0.63 | 40.0 | 4.32e-01 | 75.9% | 75.7% |
| 5042623 | 244.2.1.1 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Pyr_redox_dim | 0.62 | 43.0 | 3.81e-01 | 90.4% | 48.8% |
| 3225460 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.62 | 38.0 | 3.62e-01 | 91.6% | 53.7% |
| 3933162 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.62 | 45.0 | 4.29e-01 | 94.0% | 65.0% |
| 4007508 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.59 | 33.0 | 4.02e-01 | 91.6% | 90.0% |
| 3231588 | 382.1.1.6 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › QVR | 0.59 | 42.0 | 4.42e-01 | 91.6% | 83.6% |
| 5049794 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.59 | 37.0 | 3.09e-01 | 90.4% | 36.6% |
| 5056705 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.59 | 42.0 | 4.27e-01 | 74.7% | 98.8% |
| 5045308 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.58 | 52.0 | 4.07e-01 | 100.0% | 73.3% |
| 3828316 | 220.1.1.205 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PHS1 | 0.58 | 48.0 | 4.07e-01 | 94.0% | 81.4% |
| 3643040 | 284.2.1.3 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Maf1 | 0.58 | 45.0 | 4.75e-01 | 90.4% | 97.3% |
| 4478726 | 314.1.1.11 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta | 0.57 | 46.0 | 3.38e-01 | 88.0% | 46.5% |
| 3713327 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 37.0 | 2.82e-01 | 100.0% | 26.7% |
| 5014684 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.57 | 35.0 | 4.06e-01 | 91.6% | 89.7% |
| 3701622 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 50.0 | 4.14e-01 | 100.0% | 68.0% |
| 3495245 | 3369.1.1.0 ↗ | beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 | 0.56 | 45.0 | 3.52e-01 | 91.6% | 77.0% |
| 3657432 | 220.1.1.205 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PHS1 | 0.56 | 46.0 | 4.07e-01 | 94.0% | 86.8% |
| 3520889 | 243.9.1.2 ↗ | a+b two layers › Cystatin-like › Nuclease A inhibitor (NuiA)-related › Nuclease A inhibitor (NuiA)-related › Maf1 | 0.56 | 44.0 | 3.86e-01 | 89.2% | 83.7% |
| 3411789 | 220.1.1.66 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH | 0.55 | 48.0 | 4.09e-01 | 100.0% | 65.7% |
| 3743072 | 3435.1.1.2 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-N | 0.55 | 39.0 | 3.32e-01 | 75.9% | 54.5% |
| 3267853 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.54 | 40.0 | 2.93e-01 | 80.7% | 28.6% |
| 3216375 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.54 | 38.0 | 3.78e-01 | 90.4% | 70.6% |
| 5081134 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.54 | 33.0 | 3.80e-01 | 91.6% | 85.0% |
| 3175712 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 47.0 | 3.80e-01 | 100.0% | 60.0% |
| 3283546 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.53 | 38.0 | 3.16e-01 | 73.5% | 84.6% |
| 4871764 | 223.1.1.1 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PHY | 0.53 | 46.0 | 3.95e-01 | 95.2% | 63.8% |
| 3228907 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 44.0 | 3.94e-01 | 90.4% | 95.7% |
| 3180516 | 222.1.1.27 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 | 0.52 | 47.0 | 3.77e-01 | 100.0% | 54.5% |
| 4596042 | 223.1.1.7 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind | 0.52 | 46.0 | 3.67e-01 | 100.0% | 75.3% |
| 3898147 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.52 | 41.0 | 3.48e-01 | 90.4% | 87.7% |
| 3782121 | 3435.1.1.2 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-N | 0.52 | 37.0 | 3.07e-01 | 75.9% | 50.9% |
| 3495764 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.52 | 38.0 | 2.97e-01 | 83.1% | 35.1% |
| 5080336 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 35.0 | 3.94e-01 | 100.0% | 92.2% |
| 4946228 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 42.0 | 3.60e-01 | 94.0% | 56.2% |
| 4971294 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 37.0 | 3.97e-01 | 100.0% | 88.6% |
| 3258276 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.51 | 39.0 | 2.89e-01 | 81.9% | 29.8% |
| None | — | 0.51 | 37.0 | 2.90e-01 | 100.0% | 36.4% | |
| 4945424 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 44.0 | 3.80e-01 | 95.2% | 63.1% |
| 3286703 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 45.0 | 3.89e-01 | 100.0% | 96.2% |