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KY817360.1__ARK07717.1__Toil_gp34__00034

Bact-Vir

KY817360.1__ARK07717.1__Toil_gp34__00034

Identity

Accession:
KY817360 ↗
Kingdom:
phage

Quality

77.5 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Tectiliviricetes› Kalamavirales› Tectiviridae› Epsilontectivirus› Rhodococcus_phage_Toil

TaxID: 1975614

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-59
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2drpA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.67 40.0 4.86e-01 78.6% 100.0%
3i6eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.63 43.0 3.58e-01 73.2% 93.2%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 36.0 2.93e-01 80.4% 27.2%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 43.0 3.45e-01 76.8% 73.8%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.60 48.0 4.54e-01 91.1% 85.9%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.59 35.0 2.93e-01 85.7% 29.6%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 40.0 3.75e-01 71.4% 62.9%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 41.0 3.46e-01 76.8% 82.7%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 39.0 3.26e-01 83.9% 40.0%
1milA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 34.0 2.81e-01 80.4% 29.8%
4i14A02 3.40.50.10990 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II 0.56 37.0 2.98e-01 71.4% 52.4%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 42.0 3.38e-01 87.5% 42.0%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 3.10e-01 83.9% 38.9%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 40.0 3.82e-01 91.1% 73.2%
1wjmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.17e-01 98.2% 39.8%
2qlzA02 6.10.250.2960 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.51 41.0 3.69e-01 94.6% 100.0%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 40.0 2.57e-01 89.3% 23.8%
2wacA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 35.0 2.84e-01 73.2% 88.1%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944647 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.83 58.0 6.38e-01 73.2% 97.8%
3883088 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.71 49.0 4.60e-01 73.2% 61.4%
4117020 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.70 52.0 5.12e-01 78.6% 73.3%
3356481 386.1.1.117 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.68 45.0 4.01e-01 71.4% 47.0%
3786329 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.67 46.0 4.67e-01 78.6% 72.7%
3801858 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.63 44.0 4.39e-01 75.0% 75.0%
3658440 386.1.1.26 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_6 0.63 44.0 4.52e-01 89.3% 78.2%
3383781 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.62 43.0 4.50e-01 73.2% 82.0%
5012156 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.61 47.0 4.12e-01 94.6% 54.4%
3560901 601.19.1.20 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Fy-3 0.61 39.0 3.55e-01 100.0% 48.0%
3210733 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.59 40.0 3.98e-01 71.4% 86.7%
3652838 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.59 40.0 3.06e-01 73.2% 30.6%
4152050 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.58 40.0 2.97e-01 75.0% 40.0%
4834236 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 37.0 2.92e-01 83.9% 29.5%
3914802 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 41.0 3.96e-01 82.1% 93.8%
3866247 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.54 39.0 3.79e-01 85.7% 75.7%
5049092 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.54 39.0 2.49e-01 80.4% 79.7%
3267836 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.54 39.0 3.67e-01 98.2% 61.3%
3867103 3417.1.1.1 ↗ a+b three layers › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › BRICHOS 0.53 37.0 3.08e-01 75.0% 81.9%
3708849 10.1.1.56 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.52 42.0 2.88e-01 98.2% 98.8%
3199254 604.6.1.41 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › DUF846 0.51 35.0 2.75e-01 73.2% 71.9%
4029736 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.51 43.0 3.05e-01 98.2% 66.3%
5001969 375.1.1.338 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7479 0.51 37.0 3.47e-01 85.7% 95.0%
3980680 3308.2.1.2 ↗ beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › XAC2610 protein › XAC2610 protein › PF27031 0.51 41.0 3.06e-01 98.2% 80.0%
3485759 386.1.1.209 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › WAC_Acf1_DNA_bd 0.50 35.0 3.27e-01 82.1% 57.3%