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KY883640.1__ASV42737.1__X__00204

Bact-Vir

KY883640.1__ASV42737.1__X__00204

Identity

Accession:
KY883640 ↗
Kingdom:
phage

Quality

72.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mohonavirus› Vibrio_phage_JSF17

TaxID: 1983599

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-77
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.69 51.0 4.53e-01 77.5% 95.0%
1m61A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.68 50.0 4.35e-01 76.1% 90.4%
2ablA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.68 48.0 4.32e-01 73.2% 95.9%
1a1aB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 49.0 4.39e-01 78.9% 100.0%
2e5aA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.59 42.0 3.01e-01 77.5% 64.4%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.58 40.0 4.16e-01 73.2% 84.6%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.26e-01 81.7% 87.2%
4twbA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 38.0 3.02e-01 76.1% 96.7%
1w23A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 37.0 3.36e-01 74.6% 88.3%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.52 35.0 3.43e-01 77.5% 63.6%
2bhoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 37.0 3.26e-01 76.1% 87.3%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.52 36.0 3.21e-01 73.2% 83.5%
2hjjA00 3.30.160.130 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains 0.52 39.0 4.02e-01 84.5% 97.0%
3lm4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 37.0 3.11e-01 81.7% 60.3%
3rpzA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.50 40.0 2.78e-01 91.5% 79.1%
2r6fA04 1.10.8.280 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › ABC transporter ATPase domain-like 0.50 42.0 3.62e-01 95.8% 81.4%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3412870 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 47.0 4.65e-01 74.6% 98.7%
4976589 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.61 43.0 3.93e-01 74.6% 72.6%
3624164 331.23.1.8 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › Gemin6_C 0.58 41.0 4.21e-01 77.5% 91.4%
3574741 3006.1.1.2 ↗ a+b two layers › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Gemin6_C 0.58 41.0 4.28e-01 77.5% 98.5%
5078972 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.55 38.0 3.65e-01 74.6% 80.0%
3601388 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.53 35.0 3.50e-01 77.5% 62.7%
4043003 601.7.1.6 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › GlnD_UR_UTase 0.52 40.0 3.15e-01 87.3% 84.7%
4988554 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 33.0 3.50e-01 78.9% 72.3%
4922053 5093.1.1.4 ↗ a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Fusion_gly, Fibritin_C 0.52 42.0 2.64e-01 90.1% 35.5%
3471467 101.1.2.169 ↗ alpha arrays › HTH › HTH › winged helix domain › PheRS_DBD3 0.51 40.0 3.55e-01 94.4% 57.1%
3409172 331.23.1.3 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › IntS11_C 0.51 35.0 3.42e-01 74.6% 85.9%
3493123 101.1.1.321 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PheRS_DBD3 0.51 40.0 3.54e-01 94.4% 57.1%
2722518 331.23.1.1 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.51 36.0 2.73e-01 77.5% 35.0%
3714022 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.51 33.0 3.58e-01 73.2% 78.3%
3573991 2004.1.1.54 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Septin 0.51 42.0 3.34e-01 100.0% 95.3%
3317848 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.51 43.0 2.83e-01 100.0% 45.5%
3277795 241.11.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.50 39.0 3.22e-01 85.9% 95.6%