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KY883656.1ASV43695.1X__00025

Bact-Vir

KY883656.1__ASV43695.1__X__00025

Identity

Accession:: KY883656 ↗
Kingdom:: phage

Quality

84.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Enhodamvirus› Vibrio_phage_JSF9

TaxID: 1983616

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-81

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8b6jF01	1.10.287.20	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain	0.69	42.0	4.60e-01	100.0%	74.6%
3ijmA00	3.90.1570.20	Alpha Beta › Alpha-Beta Complex › tt1808, chain A ›	0.66	38.0	3.13e-01	98.8%	30.8%
4akgA03	3.20.180.20	Alpha Beta › Alpha-Beta Barrel › Split barrel-like › Dynein motor heavy chain, linker domain, subdomain 3	0.61	24.0	2.44e-01	87.7%	30.1%
3pfsB00	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.61	29.0	2.44e-01	95.1%	26.9%
2lxxA00	3.40.20.10	Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin	0.58	27.0	2.20e-01	97.5%	20.4%
1vt0k00	1.10.3230.20	Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4)	0.58	34.0	2.88e-01	100.0%	31.0%
2xzm901	6.20.50.180	Special › Other non-globular › N-terminal domain of TfIIb ›	0.55	30.0	3.17e-01	91.4%	58.3%
5b7hB01	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.52	24.0	2.23e-01	91.4%	27.8%
2ptqA02	1.20.200.10	Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain)	0.51	46.0	3.17e-01	100.0%	29.5%
1ykhA00	6.10.140.200	Special › Helix non-globular › Helix Hairpins ›	0.51	38.0	3.69e-01	80.2%	77.9%
3mk7C01	6.10.280.130	Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	45.0	4.29e-01	100.0%	87.2%
3bzwF00	3.40.50.1110	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase	0.51	32.0	2.33e-01	100.0%	21.4%
2vfkA00	3.90.1140.10	Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase	0.51	36.0	2.65e-01	100.0%	29.3%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4948955	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.64	23.0	1.82e-01	79.0%	16.6%
3797415	375.10.1.0 ↗	few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha	0.63	50.0	4.44e-01	87.7%	60.0%
3980782	4038.1.1.7 ↗	alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal_2	0.61	53.0	3.58e-01	100.0%	35.8%
3535625	633.23.1.39 ↗	alpha bundles › Bromodomain-like › Claudin › Claudin › PF26158	0.59	51.0	3.97e-01	98.8%	47.4%
3627795	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.56	33.0	3.31e-01	100.0%	57.6%
4558296	77.1.1.3 ↗	beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_DRC7	0.55	47.0	3.29e-01	95.1%	75.3%
3538630	77.3.1.5 ↗	beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN_DRC7	0.55	46.0	3.22e-01	92.6%	73.8%
3526138	5054.1.1.2 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans	0.54	43.0	3.05e-01	93.8%	60.3%
3581824	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.53	30.0	3.14e-01	84.0%	58.6%
3404903	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.52	46.0	3.51e-01	100.0%	80.0%
3278021	3355.1.1.16 ↗	alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › DcuC	0.51	42.0	2.63e-01	91.4%	16.6%

D2 medium residues 103-132_152-243

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12236.15 best	Head-tail_con	62.5	3.80e-17	73.8%	21.3%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6umqA01	1.20.930.60	Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A ›	0.53	30.0	3.14e-01	73.0%	57.4%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3801648	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.54	38.0	3.11e-01	73.0%	58.3%